hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-14261624/chunk_1/iprscan-20080811-14261624.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: fk14434
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00727                                                 102.6    4.5e-26   4
SM00213                                                  63.7    2.4e-14   1
SM00165                                                  38.2    1.1e-06   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00213    1/1      12    82 ..     1    72 []    63.7  2.4e-14
SM00727    1/4     191   228 ..     1    46 []    36.9  2.8e-06
SM00727    2/4     229   260 ..     1    46 []    20.5     0.24
SM00727    3/4     392   439 ..     1    46 []    40.2  2.8e-07
SM00727    4/4     443   475 ..     1    46 []     5.1       32
SM00165    1/1     558   596 ..     1    38 []    38.2  1.1e-06

Alignments of top-scoring domains:
SM00213: domain 1 of 1, from 12 to 82: score 63.7, E = 2.4e-14
                   *->ieltvktldgektitlevkpsdwTVselKekiaelegiPpeqQrLiy
                      i++tvkt++  ++ ++ ++  + +V+e+Ke i ++ + + +q  Li+
     fk14434    12    IRVTVKTPK--DKEEIVICDRA-SVKEFKEEISRRFKAQQDQLVLIF 55   

                   aGk.LeDd.tLaeygiqdgstihlvlr<-*
                   aGk L+D++tL ++gi+dg t+hlv++   
     fk14434    56 AGKiLKDGdTLNQHGIKDGLTVHLVIK    82   

SM00727: domain 1 of 4, from 191 to 228: score 36.9, E = 2.8e-06
                   *->dPemaqllqsnPevrsllqdmqqNPdmlaqmmqsirqqNPelmqli<
                      +Pem +++++nP v+ +++    NPd++++m+++    NP+++ql+ 
     fk14434   191    NPEMLSQIMENPLVQDMMS----NPDLMRHMIMA----NPQMQQLM  228  

                   -*
                     
     fk14434     -    -    

SM00727: domain 2 of 4, from 229 to 260: score 20.5, E = 0.24
                   *->dPemaqllqsnPevrsllqdmqqNPdmlaqmmqsirqqNPelmqli<
                               +nPe +++l+    NP++++q m+ +r  NP++mq++ 
     fk14434   229    --------ERNPEISHMLN----NPELMRQTMELAR--NPAMMQEM  260  

                   -*
                     
     fk14434     -    -    

SM00727: domain 3 of 4, from 392 to 439: score 40.2, E = 2.8e-07
                   *->dPemaqllqsnPevrsllqdmqqNPdmlaqmmqsir..qqNPelmql
                      +P+++q+  s P++rs++q ++qNPd+ aqmm + +  ++NP+l+++
     fk14434   392    NPQLMQNVISAPYMRSMMQTLAQNPDFAAQMMVNVPlfAGNPQLQEQ 438  

                   i<-*
                       
     fk14434   439 L    439  

SM00727: domain 4 of 4, from 443 to 475: score 5.1, E = 32
                   *->dPemaqllqsnPevrsllqdmqqNPdmlaqmmqsirqqNPelmqli<
                       P + q++q nPe +s+l     NP ++++++q        ++q   
     fk14434   443    LPVFLQQMQ-NPESLSILT----NPRAMQALLQ--------IQQGL  475  

                   -*
                     
     fk14434     -    -    

SM00165: domain 1 of 1, from 558 to 596: score 38.2, E = 1.1e-06
                   *->deekieqLleMGFsre.eavdALratngNverAaeyLls<-*
                       ++++eqL +MGF + +++++AL at+g++++A+e Ll    
     fk14434   558    FQQQLEQLNSMGFINReANLQALIATGGDINAAIERLLG    596  

//