hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080811/iprscan-20080811-14261624/chunk_1/iprscan-20080811-14261624.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fk14434 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00727 102.6 4.5e-26 4 SM00213 63.7 2.4e-14 1 SM00165 38.2 1.1e-06 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00213 1/1 12 82 .. 1 72 [] 63.7 2.4e-14 SM00727 1/4 191 228 .. 1 46 [] 36.9 2.8e-06 SM00727 2/4 229 260 .. 1 46 [] 20.5 0.24 SM00727 3/4 392 439 .. 1 46 [] 40.2 2.8e-07 SM00727 4/4 443 475 .. 1 46 [] 5.1 32 SM00165 1/1 558 596 .. 1 38 [] 38.2 1.1e-06 Alignments of top-scoring domains: SM00213: domain 1 of 1, from 12 to 82: score 63.7, E = 2.4e-14 *->ieltvktldgektitlevkpsdwTVselKekiaelegiPpeqQrLiy i++tvkt++ ++ ++ ++ + +V+e+Ke i ++ + + +q Li+ fk14434 12 IRVTVKTPK--DKEEIVICDRA-SVKEFKEEISRRFKAQQDQLVLIF 55 aGk.LeDd.tLaeygiqdgstihlvlr<-* aGk L+D++tL ++gi+dg t+hlv++ fk14434 56 AGKiLKDGdTLNQHGIKDGLTVHLVIK 82 SM00727: domain 1 of 4, from 191 to 228: score 36.9, E = 2.8e-06 *->dPemaqllqsnPevrsllqdmqqNPdmlaqmmqsirqqNPelmqli< +Pem +++++nP v+ +++ NPd++++m+++ NP+++ql+ fk14434 191 NPEMLSQIMENPLVQDMMS----NPDLMRHMIMA----NPQMQQLM 228 -* fk14434 - - SM00727: domain 2 of 4, from 229 to 260: score 20.5, E = 0.24 *->dPemaqllqsnPevrsllqdmqqNPdmlaqmmqsirqqNPelmqli< +nPe +++l+ NP++++q m+ +r NP++mq++ fk14434 229 --------ERNPEISHMLN----NPELMRQTMELAR--NPAMMQEM 260 -* fk14434 - - SM00727: domain 3 of 4, from 392 to 439: score 40.2, E = 2.8e-07 *->dPemaqllqsnPevrsllqdmqqNPdmlaqmmqsir..qqNPelmql +P+++q+ s P++rs++q ++qNPd+ aqmm + + ++NP+l+++ fk14434 392 NPQLMQNVISAPYMRSMMQTLAQNPDFAAQMMVNVPlfAGNPQLQEQ 438 i<-* fk14434 439 L 439 SM00727: domain 4 of 4, from 443 to 475: score 5.1, E = 32 *->dPemaqllqsnPevrsllqdmqqNPdmlaqmmqsirqqNPelmqli< P + q++q nPe +s+l NP ++++++q ++q fk14434 443 LPVFLQQMQ-NPESLSILT----NPRAMQALLQ--------IQQGL 475 -* fk14434 - - SM00165: domain 1 of 1, from 558 to 596: score 38.2, E = 1.1e-06 *->deekieqLleMGFsre.eavdALratngNverAaeyLls<-* ++++eqL +MGF + +++++AL at+g++++A+e Ll fk14434 558 FQQQLEQLNSMGFINReANLQALIATGGDINAAIERLLG 596 //