hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080811/iprscan-20080811-14320131/chunk_1/iprscan-20080811-14320131.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fk14761 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00060.17.ls Ligand-gated ion channel 550.9 1.2e-162 1 PF00060.17.fs Ligand-gated ion channel 549.1 4.3e-162 1 PF01094.18.fs Receptor family ligand binding region 161.7 1.8e-45 1 PF01094.18.ls Receptor family ligand binding region 160.6 3.7e-45 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01094.18.ls 1/1 67 408 .. 1 421 [] 160.6 3.7e-45 PF01094.18.fs 1/1 84 408 .. 24 421 .] 161.7 1.8e-45 PF00060.17.fs 1/1 571 862 .. 1 304 [] 549.1 4.3e-162 PF00060.17.ls 1/1 571 862 .. 1 304 [] 550.9 1.2e-162 Alignments of top-scoring domains: PF01094.18.ls: domain 1 of 1, from 67 to 408: score 160.6, E = 3.7e-45 *->qvlpAmrlAiediNadggillpgitlgvedddtcsdsalcsslsFdd q A+r + + + +l+ ++d+ + + fk14761 67 QEYSAFRVGMVQFSTSEF------RLTPHIDNLEV----------AN 97 .aavaaaacllkskgVvaiiGPscssvaiavarlanewgiPlisygatap ++av++a c++ s+gV+ai+G + ++ ++ ++++ +++ +i++ fk14761 98 sFAVTNAFCSQFSRGVYAIFGFYDKKSVNTITSFCGTLHVSFITP----- 142 slsdklknryptfaRtvpsdtkqgaAiadilkhtfgWkrvaviyddddyd s++ + +p+++ p+ ++++ ++W+++a +yd+d + fk14761 143 SFPT--DGTHPFVIQMRPDLKGALLSLIEY----YQWDKFAYLYDSDRG- 185 ygeggcYFtlealedalkeaggkvvavAqasdvvvvsevissdddftall l++l+ +l +a k ++v + + i +d+ ++ + fk14761 186 ---------LSTLQAVLDSAAEKKWQV-----TAINVGNINNDKKDEMYR 221 kelkdlikskarvivlcgssddlgllkrqilrqarelGlmsggYvwiltd + +dl +k+r ++l+++ d + i+ q+ +G gY++i ++ fk14761 222 SLFQDLELKKERRVILDCERDKV----NDIVDQVITIGKHVKGYHYIIAN 267 lwsdsldsqgdgsdlpwariagadeGlltartfpfqldndkareaakgvl l +++ d k + +++v fk14761 268 LGFTD-------------------------------GDLLKIQFGGANVS 286 gitlk.p.spefqeflerlkk.........sdtevnayallaYDAVyllA g+++++ +++ +++f er++ ++++ ++ +t++ + ++l+YDAV+++ fk14761 287 GFQIVdYdDSLVSKFIERWSTleekeypgaHTTTIKYTSALTYDAVQVMT 336 hAlnealrddpngtaglcnacrdsrvddasnalg.g.lnlg.lmkw.dGs +A++++++++ +++++ + g+++++++ +w++G fk14761 337 EAFRNLRKQRIEISRRG----------------NaGdCLANpAVPWgQGV 370 qlleylrnkvnFeGltGdvqfddnggrrpdyslvilnwdg<-* + ++l++ v+ eGl+G+++fd+ +g r++y+ i+ + fk14761 371 EIERALKQ-VQVEGLSGNIKFDQ-NGKRINYTINIMELKT 408 PF01094.18.fs: domain 1 of 1, from 84 to 408: score 161.7, E = 1.8e-45 *->itlgvedddtcsdsalcsslsFdd.aavaaaacllkskgVvaiiGPs ++l+ ++d+ + +++av++a c++ s+gV+ai+G + fk14761 84 FRLTPHIDNLEV----------ANsFAVTNAFCSQFSRGVYAIFGFY 120 cssvaiavarlanewgiPlisygatapslsdklknryptfaRtvpsdtkq ++ ++ ++++ +++ +i++ s++ + +p+++ p+ fk14761 121 DKKSVNTITSFCGTLHVSFITP-----SFPT--DGTHPFVIQMRPDLKGA 163 gaAiadilkhtfgWkrvaviyddddydygeggcYFtlealedalkeaggk ++++ ++W+++a +yd+d + l++l+ +l +a k fk14761 164 LLSLIEY----YQWDKFAYLYDSDRG----------LSTLQAVLDSAAEK 199 vvavAqasdvvvvsevissdddftallkelkdlikskarvivlcgssddl ++v + + i +d+ ++ + + +dl +k+r ++l+++ d + fk14761 200 KWQV-----TAINVGNINNDKKDEMYRSLFQDLELKKERRVILDCERDKV 244 gllkrqilrqarelGlmsggYvwiltdlwsdsldsqgdgsdlpwariaga i+ q+ +G gY++i ++l +++ fk14761 245 ----NDIVDQVITIGKHVKGYHYIIANLGFTD------------------ 272 deGlltartfpfqldndkareaakgvlgitlk.p.spefqeflerlkk.. d k + +++v g+++++ +++ +++f er++ + fk14761 273 -------------GDLLKIQFGGANVSGFQIVdYdDSLVSKFIERWSTle 309 .......sdtevnayallaYDAVyllAhAlnealrddpngtaglcnacrd +++ ++ +t++ + ++l+YDAV+++ +A++++++++ +++++ fk14761 310 ekeypgaHTTTIKYTSALTYDAVQVMTEAFRNLRKQRIEISRRG------ 353 srvddasnalg.g.lnlg.lmkw.dGsqlleylrnkvnFeGltGdvqfdd + g+++++++ +w++G + ++l++ v+ eGl+G+++fd+ fk14761 354 ----------NaGdCLANpAVPWgQGVEIERALKQ-VQVEGLSGNIKFDQ 392 nggrrpdyslvilnwdg<-* +g r++y+ i+ + fk14761 393 -NGKRINYTINIMELKT 408 PF00060.17.fs: domain 1 of 1, from 571 to 862: score 549.1, E = 4.3e-162 *->slevWlcilaayllvsvvlflverwfsPyewrgnrqprpcnedd... e+W+ci++ay++vsvvlflv+r fsPyew+ +++ed++++ fk14761 571 AYEIWMCIVFAYIGVSVVLFLVSR-FSPYEWHT-----EEFEDGret 611 qspeeepnqftlsnslWFsfgalmqQGcdelPrslSgRivvgvWwfFaLi q ++e +n+f ++nslWFs+ga+m QGcd++PrslSgRiv+gvWwfF+Li fk14761 612 Q-SSESTNEFGIFNSLWFSLGAFMRQGCDISPRSLSGRIVGGVWWFFTLI 660 lisSYTANLAAFLTvermqspIesleDLakqnpkieYGtlrggstftffk +isSYTANLAAFLTverm+spIes+eDL+kq+ +i YGtl++gst++ff+ fk14761 661 IISSYTANLAAFLTVERMVSPIESAEDLSKQT-EIAYGTLDSGSTKEFFR 709 eskiptyrrmweymnsrkgrskaPsvfvksyeeGvqrVrngpenglyAFl +ski+++ +mw ym s+ Psvfv++++eGv+rVr++ +g+yA+l fk14761 710 RSKIAVFDKMWTYMRSAE-----PSVFVRTTAEGVARVRKS--KGKYAYL 752 mEstyleyevarnpdCdLttvGevlfgtkGYGIAlpkgSPlrdklslAIL Est++ey+ +r+p Cd+++vG+ ++++kGYGIA+pkgS lr ++lA+L fk14761 753 LESTMNEYIEQRKP-CDTMKVGG-NLDSKGYGIATPKGSSLRTPVNLAVL 800 eLsEsGelekLenKWwkkkgkCpsesta..vsssqLglenfaGlFliLgi +LsE+G+l+kL+nKWw++kg+C +++ +++++s+L+l+n+aG+F+iL + fk14761 801 KLSEQGVLDKLKNKWWYDKGECGAKDSGskEKTSALSLSNVAGVFYILVG 850 GlvLallvalfE<-* Gl+La+lval+E fk14761 851 GLGLAMLVALIE 862 PF00060.17.ls: domain 1 of 1, from 571 to 862: score 550.9, E = 1.2e-162 *->slevWlcilaayllvsvvlflverwfsPyewrgnrqprpcnedd... e+W+ci++ay++vsvvlflv+r fsPyew+ +++ed++++ fk14761 571 AYEIWMCIVFAYIGVSVVLFLVSR-FSPYEWHT-----EEFEDGret 611 qspeeepnqftlsnslWFsfgalmqQGcdelPrslSgRivvgvWwfFaLi q ++e +n+f ++nslWFs+ga+m QGcd++PrslSgRiv+gvWwfF+Li fk14761 612 Q-SSESTNEFGIFNSLWFSLGAFMRQGCDISPRSLSGRIVGGVWWFFTLI 660 lisSYTANLAAFLTvermqspIesleDLakqnpkieYGtlrggstftffk +isSYTANLAAFLTverm+spIes+eDL+kq+ +i YGtl++gst++ff+ fk14761 661 IISSYTANLAAFLTVERMVSPIESAEDLSKQT-EIAYGTLDSGSTKEFFR 709 eskiptyrrmweymnsrkgrskaPsvfvksyeeGvqrVrngpenglyAFl +ski+++ +mw ym s+ Psvfv++++eGv+rVr++ +g+yA+l fk14761 710 RSKIAVFDKMWTYMRSAE-----PSVFVRTTAEGVARVRKS--KGKYAYL 752 mEstyleyevarnpdCdLttvGevlfgtkGYGIAlpkgSPlrdklslAIL Est++ey+ +r+p Cd+++vG+ ++++kGYGIA+pkgS lr ++lA+L fk14761 753 LESTMNEYIEQRKP-CDTMKVGG-NLDSKGYGIATPKGSSLRTPVNLAVL 800 eLsEsGelekLenKWwkkkgkCpsesta..vsssqLglenfaGlFliLgi +LsE+G+l+kL+nKWw++kg+C +++ +++++s+L+l+n+aG+F+iL + fk14761 801 KLSEQGVLDKLKNKWWYDKGECGAKDSGskEKTSALSLSNVAGVFYILVG 850 GlvLallvalfE<-* Gl+La+lval+E fk14761 851 GLGLAMLVALIE 862 //