hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-14320131/chunk_1/iprscan-20080811-14320131.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: fk14761
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00079                                                 456.4   1.4e-132   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00079    1/1     443   818 ..     1   296 []   456.4 1.4e-132

Alignments of top-scoring domains:
SM00079: domain 1 of 1, from 443 to 818: score 456.4, E = 1.4e-132
                   *->tlkVttrilekPfvmfkknpeglkiDPitgnkcfeGyCIDLlealak
                      t++Vtt ile P+vm+kkn+e+l     +gn+++eGyC+DL  ++ak
     fk14761   443    TVVVTT-ILESPYVMMKKNHEML-----EGNERYEGYCVDLAAEIAK 483  

                   ilgFtYelelVpDGkYGskdantgnWnGmIgeLirgeADmAVapLTItae
                   ++gF+Y+l +V+DGkYG++da+t+ WnGm+geL++g+AD+A+apLTIt  
     fk14761   484 HCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLV 533  

                   RervVDFTkPFmelGIsILvkkpdkqksslfsFLePf.............
                   Re+v+DF+kPFm+lGIsI++kkp+k+k+++fsFL+P+  +          
     fk14761   534 REEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLayeiwmcivfayi 583  

                   ..................................................
                   + +      ++ ++ + ++++ ++++++++++++++ +  ++   + +  
     fk14761   584 gvsvvlflvsrfspyewhteefedgretqssestnefgifnslwfslgaf 633  

                   ................................skkLAAfLTvermespIs
                    +++ + ++++ +++  ++     +    ++ + +LAAfLTverm+spI+
     fk14761   634 mrqgcdisprslsgrivggvwwfftliiissyTANLAAFLTVERMVSPIE 683  

                   sveDLakrnpQtkieyGTvrgssTeefFkrpSkiptysrmwryMssrsks
                   s+eDL+k   Qt+i yGT++++sT efF+r Ski  + +mw yM  rs++
     fk14761   684 SAEDLSK---QTEIAYGTLDSGSTKEFFRR-SKIAVFDKMWTYM--RSAE 727  

                   psvfvkslseGvqrvlnskGnYAFlmEstyleYeasrDpnCdYKLvtvGe
                   psvfv++++eGv+rv++skG+YA+l+Est++eY+ +r ++Cd  +++vG+
     fk14761   728 PSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQR-KPCD--TMKVGG 774  

                   vfgskGYGIAlpkgSPlrdklSrAILkLsEsGeLekLknKWwkk<-*
                   +++skGYGIA+pkgS lr  +++A+LkLsE G+L+kLknKWw++   
     fk14761   775 NLDSKGYGIATPKGSSLRTPVNLAVLKLSEQGVLDKLKNKWWYD    818  

//