hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-14485551/chunk_1/iprscan-20080811-14485551.nocrc
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Query sequence: fk14877
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00641.9.ls Zn-finger in Ran binding protein and others     58.8    1.6e-14   2
PF00641.9.fs Zn-finger in Ran binding protein and others     54.9    8.2e-14   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00641.9.fs   1/2      11    42 ..     1    32 []    28.3  1.1e-06
PF00641.9.ls   1/2      11    42 ..     1    32 []    30.3  6.2e-06
PF00641.9.fs   2/2      67    96 ..     1    32 []    26.5  3.4e-06
PF00641.9.ls   2/2      67    96 ..     1    32 []    28.5  2.2e-05

Alignments of top-scoring domains:
PF00641.9.fs: domain 1 of 2, from 11 to 42: score 28.3, E = 1.1e-06
                   *->ragsdWdC.issClvqNfatstkCvaCqapkps<-*
                      ++g dW C+ ++C++ Nfa++t C++C+ +k     
     fk14877    11    SDG-DWICpDKKCGNVNFARRTSCNRCGREKTT    42   

PF00641.9.ls: domain 1 of 2, from 11 to 42: score 30.3, E = 6.2e-06
                   *->ragsdWdC.issClvqNfatstkCvaCqapkps<-*
                      ++g dW C+ ++C++ Nfa++t C++C+ +k     
     fk14877    11    SDG-DWICpDKKCGNVNFARRTSCNRCGREKTT    42   

PF00641.9.fs: domain 2 of 2, from 67 to 96: score 26.5, E = 3.4e-06
                   *->ragsdWdCissClvqNfatstkCvaCqapkps<-*
                      +a  dW+C ++C + N a++++C++C +pk+    
     fk14877    67    SAN-DWQC-KTCSNVNWARRSECNMCNTPKYA    96   

PF00641.9.ls: domain 2 of 2, from 67 to 96: score 28.5, E = 2.2e-05
                   *->ragsdWdCissClvqNfatstkCvaCqapkps<-*
                      +a  dW+C ++C + N a++++C++C +pk+    
     fk14877    67    SAN-DWQC-KTCSNVNWARRSECNMCNTPKYA    96   

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