hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-14485551/chunk_1/iprscan-20080811-14485551.nocrc
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Query sequence: fk14877
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00547                                                  78.1    1.1e-18   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00547    1/2      13    39 ..     1    25 []    38.3    1e-06
SM00547    2/2      69    93 ..     1    25 []    39.8  3.6e-07

Alignments of top-scoring domains:
SM00547: domain 1 of 2, from 13 to 39: score 38.3, E = 1e-06
                   *->gdWeCpa..CtflNfasrskCfaCgap<-*
                      gdW+Cp ++C+++Nfa+r++C++Cg     
     fk14877    13    GDWICPDkkCGNVNFARRTSCNRCGRE    39   

SM00547: domain 2 of 2, from 69 to 93: score 39.8, E = 3.6e-07
                   *->gdWeCpaCtflNfasrskCfaCgap<-*
                      +dW+C++C+++N+a+rs+C++C++p   
     fk14877    69    NDWQCKTCSNVNWARRSECNMCNTP    93   

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