hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-14595240/chunk_1/iprscan-20080811-14595240.nocrc
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Query sequence: fk15444
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00194                                                 325.8    2.9e-93   1
SM00404                                                 142.5    4.5e-38   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00194    1/1       2   254 ..     1   308 []   325.8  2.9e-93
SM00404    1/1     148   251 ..     1    92 []   142.5  4.5e-38

Alignments of top-scoring domains:
SM00194: domain 1 of 1, from 2 to 254: score 325.8, E = 2.9e-93
                   *->gleeEferlqrltpddllsnfltdesctvanlpeNreseKNRYkcdi
                        ++Ef ++ + +++          ++      e       R +  i
     fk15444     2    --QQEFRMYGKDGKGT---------NWMDQGDME------CRMQ-EI 30   

                   lpyDhtRVkLkppdgesdseegsDYINAnyidgykepkayIaTQGPLpsT
                      Dh+RVkL++          +DYINA+ +d+++ +++yI+TQGPLp+T
     fk15444    31 --DDHSRVKLQN--------AENDYINASLVDIEEAQRSYILTQGPLPNT 70   

                   veDFWrMVweqkvpvIVMLtnlvEkkterrkeggreKCaqYWPee..slt
                   + +FW MVw+qk++++VML+++vEk          +KCaqYWP +++++ 
     fk15444    71 CCHFWLMVWQQKTKAVVMLNRIVEK--------ESVKCAQYWPTDdqEML 112  

                   yG..ditVtlvseeklpddytiRtlevtntgtekkdlkaksetrtVthyh
                   +++++++V+l+se++++ +yt++ l+++n +         +etrt+ h+h
     fk15444   113 FKetGFSVKLLSEDVKS-YYTVHLLQLENINS--------GETRTISHFH 153  

                   ytnWPDhgvPespkslldfvrlvrksqssspnssenivssnskyagtsps
                   yt+WPD+gvPesp s+l+f+ +vr+s s +p+                 +
     fk15444   154 YTTWPDFGVPESPASFLNFLFKVRESGSLNPD-----------------H 186  

                   gPivVHCSAGvGRTGTFiaidillqqlea...vdifdiVkelRsqRpgmV
                   gP v+HCSAG+GR+GTF ++d++l ++e++++++i++++  +R++R+g++
     fk15444   187 GPAVIHCSAGIGRSGTFSLVDTCLVLMEKgddINIKQVLLNMRKYRMGLI 236  

                   QTeeQYiFlyraileylk<-*
                   QT++Q++F y+ai+e +k   
     fk15444   237 QTPDQLRFSYMAIIEGAK    254  

SM00404: domain 1 of 1, from 148 to 251: score 142.5, E = 4.5e-38
                   *->tvkhyhytgWpDhvekdsgvPe..dsileflravrk.........Pi
                      t+ h+hyt+WpD+     gvPe++ s+l fl +vr++++ +++++P 
     fk15444   148    TISHFHYTTWPDF-----GVPEspASFLNFLFKVREsgslnpdhgPA 189  

                   vVHCSAGvGRTGtfvaidillqq......vdifdtvkelRsqRpgmvqte
                   v+HCSAG+GR+Gtf ++d++l + +++++++i++++  +R++R+g++qt 
     fk15444   190 VIHCSAGIGRSGTFSLVDTCLVLmekgddINIKQVLLNMRKYRMGLIQTP 239  

                   eQYlFlyralle<-*
                   +Q +F y+a++e   
     fk15444   240 DQLRFSYMAIIE    251  

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