hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090618/iprscan-20090618-13364828/chunk_1/iprscan-20090618-13364828.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fk16294 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF01602.10.ls Adaptin N terminal region 604.8 7.4e-179 1 PF01602.10.fs Adaptin N terminal region 602.7 3e-178 1 PF08752.1.ls Coatomer gamma subunit appendage domain 591.7 6.5e-175 1 PF08752.1.fs Coatomer gamma subunit appendage domain 589.8 2.4e-174 1 PF02985.12.fs HEAT repeat 26.4 2.1e-06 4 PF02985.12.ls HEAT repeat 29.6 9.9e-06 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01602.10.fs 1/1 47 563 .. 1 630 [] 602.7 3e-178 PF01602.10.ls 1/1 47 563 .. 1 630 [] 604.8 7.4e-179 PF02985.12.ls 3/3 527 563 .. 1 36 [] 16.2 0.11 PF08752.1.fs 1/1 633 898 .] 1 305 [] 589.8 2.4e-174 PF08752.1.ls 1/1 633 898 .] 1 305 [] 591.7 6.5e-175 Alignments of top-scoring domains: PF01602.10.fs: domain 1 of 1, from 47 to 563: score 602.7, E = 3e-178 *->ekkeitqelaeilnsfkddKkLdpykkkdavkKliylimlGnedisf ek+ ++qe++ ++n+ +++ p+k+++++ K++yli++G e+ fk16294 47 EKSAVLQEAR-VFNETPIN----PRKCAHILTKILYLINQG-EHLGT 87 lfaevvklvaskkdfelKrlgLRrmVYLylkllaeespDGklhlaiLatn +a++ ++ ++k+ f++ ++ LRrm+YL++k++++ ++D ++i++++ fk16294 88 TEATEAFFAMTKL-FQSNDPTLRRMCYLTIKEMSCIAED----VIIVTSS 132 tikkDLqspNplirglALrtLssirvpelardlapdikkllvdespnpyV + k+ ++++++ +rg A+r+L+ i ++++++++++++k+++vd + p+V fk16294 133 LTKD-MTGKEDNYRGPAVRALCQITDSTMLQAIERYMKQAIVD--KVPSV 179 RKkAalailkLyrkdpelvernglvedlkelLslDsnpgVvsaAVaalde +++A++++l+L++++ ++v+r +v++++e+ s ++n+ fk16294 180 SSSALVSSLHLLKCSFDVVKR--WVNEAQEAAS-SDNI------------ 214 ickqnpdllllfrDlklvplLvrfvrllrklltalsdlnewggnsvpqpf ++q+++l+ll++ vr +++r++++++ + + g +++pf fk16294 215 -MVQYHALGLLYH--------VR--KNDRLAVNKMISKVTRHG--LKSPF 251 llvkLiklLrlylrkdlvepdprlGlngkdlserltfilqlvntkvelsk + +++i r ++ k+l+e+d g+++s +++fi++++++k+e++ fk16294 252 AYCMMI---R-VASKQLEEED------GSRDSPLFDFIESCLRNKHEMV- 290 vqhknvsnavlfelaltisdldsapelivlainkLlvlLlssdpnlrYva ++++a ++++++++s ++ap a+++L+++++s++ +lrY+a fk16294 291 ----VYEAASAIVNLPGCSAKELAP-----AVSVLQLFCSSPKAALRYAA 331 LrnlnkivmsekrpskeeglekavqrhrlkiffclstdddisIrlraLdl +r+lnk++m k+ps av +++l+++++++ d ++sI+++a+++ fk16294 332 VRTLNKVAM--KHPS-------AVTACNLDLENLVT-DSNRSIATLAITT 371 LykLvdesNvkeivkeLkeyveeadndehedtfvkiavvaiirlacekdn L+k+++es++++++k++ ++++e++ d ++k +vv +i +c k fk16294 372 LLKTGSESSIDRLMKQISSFMSEIS-D-----EFKVVVVQAISALCQK-- 413 YqfptdaewcidvLleLLkltagsyvvaeaivvqiidiirkyPelreyaV +p++++ +++L+ +L+ ++g++++++aiv++ii ii+++ e++e + fk16294 414 --YPRKHAVLMNFLFTMLR-EEGGFEYKRAIVDCIISIIEENSESKETG- 459 sqiitlLaallesiesmpearaaaiWilGEygelipdiapceesepseve L++l+e+ie+ +e++ a++il+++g+++p++ +ps fk16294 460 ------LSHLCEFIED-CEFTVLATRILHLLGQEGPKT-----TNPS--- 494 sdidllreiaenfslenlevraqlLtalvKLgltkpdikqQeeiqpveel +++r+i+++++le+ evra +++al+K+g+++++ + ++ fk16294 495 ---KYIRFIYNRVVLEHEEVRAGAVSALAKFGAQNEE---------MLPS 532 iqsvlslalnssdnelElRDRAreylrllslad<-* i ++l+++ ++ d E+RDRA++yl+ l++ + fk16294 533 ILVLLKRCVMDDD--NEVRDRATFYLNVLEQKQ 563 PF01602.10.ls: domain 1 of 1, from 47 to 563: score 604.8, E = 7.4e-179 *->ekkeitqelaeilnsfkddKkLdpykkkdavkKliylimlGnedisf ek+ ++qe++ ++n+ +++ p+k+++++ K++yli++G e+ fk16294 47 EKSAVLQEAR-VFNETPIN----PRKCAHILTKILYLINQG-EHLGT 87 lfaevvklvaskkdfelKrlgLRrmVYLylkllaeespDGklhlaiLatn +a++ ++ ++k+ f++ ++ LRrm+YL++k++++ ++D ++i++++ fk16294 88 TEATEAFFAMTKL-FQSNDPTLRRMCYLTIKEMSCIAED----VIIVTSS 132 tikkDLqspNplirglALrtLssirvpelardlapdikkllvdespnpyV + k+ ++++++ +rg A+r+L+ i ++++++++++++k+++vd + p+V fk16294 133 LTKD-MTGKEDNYRGPAVRALCQITDSTMLQAIERYMKQAIVD--KVPSV 179 RKkAalailkLyrkdpelvernglvedlkelLslDsnpgVvsaAVaalde +++A++++l+L++++ ++v+r +v++++e+ s ++n+ fk16294 180 SSSALVSSLHLLKCSFDVVKR--WVNEAQEAAS-SDNI------------ 214 ickqnpdllllfrDlklvplLvrfvrllrklltalsdlnewggnsvpqpf ++q+++l+ll++ vr +++r++++++ + + g +++pf fk16294 215 -MVQYHALGLLYH--------VR--KNDRLAVNKMISKVTRHG--LKSPF 251 llvkLiklLrlylrkdlvepdprlGlngkdlserltfilqlvntkvelsk + +++i r ++ k+l+e+d g+++s +++fi++++++k+e++ fk16294 252 AYCMMI---R-VASKQLEEED------GSRDSPLFDFIESCLRNKHEMV- 290 vqhknvsnavlfelaltisdldsapelivlainkLlvlLlssdpnlrYva ++++a ++++++++s ++ap a+++L+++++s++ +lrY+a fk16294 291 ----VYEAASAIVNLPGCSAKELAP-----AVSVLQLFCSSPKAALRYAA 331 LrnlnkivmsekrpskeeglekavqrhrlkiffclstdddisIrlraLdl +r+lnk++m k+ps av +++l+++++++ d ++sI+++a+++ fk16294 332 VRTLNKVAM--KHPS-------AVTACNLDLENLVT-DSNRSIATLAITT 371 LykLvdesNvkeivkeLkeyveeadndehedtfvkiavvaiirlacekdn L+k+++es++++++k++ ++++e++ d ++k +vv +i +c k fk16294 372 LLKTGSESSIDRLMKQISSFMSEIS-D-----EFKVVVVQAISALCQK-- 413 YqfptdaewcidvLleLLkltagsyvvaeaivvqiidiirkyPelreyaV +p++++ +++L+ +L+ ++g++++++aiv++ii ii+++ e++e + fk16294 414 --YPRKHAVLMNFLFTMLR-EEGGFEYKRAIVDCIISIIEENSESKETG- 459 sqiitlLaallesiesmpearaaaiWilGEygelipdiapceesepseve L++l+e+ie+ +e++ a++il+++g+++p++ +ps fk16294 460 ------LSHLCEFIED-CEFTVLATRILHLLGQEGPKT-----TNPS--- 494 sdidllreiaenfslenlevraqlLtalvKLgltkpdikqQeeiqpveel +++r+i+++++le+ evra +++al+K+g+++++ + ++ fk16294 495 ---KYIRFIYNRVVLEHEEVRAGAVSALAKFGAQNEE---------MLPS 532 iqsvlslalnssdnelElRDRAreylrllslad<-* i ++l+++ ++ d E+RDRA++yl+ l++ + fk16294 533 ILVLLKRCVMDDD--NEVRDRATFYLNVLEQKQ 563 PF02985.12.ls: domain 3 of 3, from 527 to 563: score 16.2, E = 0.11 *->e.ildellplllkllnDpdpeVReaAaeaLgalaevl<-* e+ l+++l ll +++ D+d eVR+ A + L +l ++ fk16294 527 EeMLPSILVLLKRCVMDDDNEVRDRATFYLNVLEQKQ 563 PF08752.1.fs: domain 1 of 1, from 633 to 898: score 589.8, E = 2.4e-174 *->rqekYaeqLaaIPefaalGpLlKSsSepveLTEsETEYvVscvKHiF rqe+++eqLaa+Pef +lGpL+KSs+epv+LTEsETEYv++c KH+F fk16294 633 RQEIFQEQLAAVPEFRGLGPLFKSSPEPVALTESETEYVIRCTKHTF 679 iEanHvVLQFditNTLpDqvLenVsVvaepseekeeyeedfivpapkLpy +nH+V+QFd+tNTL+Dq LenV+V++ep e+ ye+ ++vpa++Lpy fk16294 680 --TNHMVFQFDCTNTLNDQTLENVTVQMEPTEA---YEVLCYVPARSLPY 724 nqpGnvYvlleknvPFnisLDsnDPnLEsnnnsqtqtpedddeavsstFg nqpG++Y+l+ + p++d++av++tF+ fk16294 725 NQPGTCYTLVAL-------------------------PKEDPTAVACTFS 749 ntLkFtvKDcDPtTGePDSDeGYeDEYqlEdLEltvsDyiqpCivyksnF + +kFtvKDcDPtTGe D DeGYeDEY+lEdLE+tv+D+iq+ v+k nF fk16294 750 CMMKFTVKDCDPTTGETD-DEGYEDEYVLEDLEVTVADHIQK--VMKLNF 796 gsaWdqlgdeeWaeaeeTFqLSnvktledAVnklikaLgmqPlegSDkVP ++aWd++gde +e+eeTF+LS++ktle+AV++++k+Lgm+P+e+SDkVP fk16294 797 EAAWDEVGDE--FEKEETFTLSTIKTLEEAVGNIVKFLGMHPCERSDKVP 844 enkttHtLkLsGkfrgGgPikVLvrarLAlaqgtGVtmkltvRSeeedvA +nk+tHtL+L+G+frgG+ ++Lvr+rL l + Vtm++t+RS ee+++ fk16294 845 DNKNTHTLLLAGVFRGGH--DILVRSRLLLLDT--VTMQVTARSLEELPV 890 elviasVg<-* ++++asVg fk16294 891 DIILASVG 898 PF08752.1.ls: domain 1 of 1, from 633 to 898: score 591.7, E = 6.5e-175 *->rqekYaeqLaaIPefaalGpLlKSsSepveLTEsETEYvVscvKHiF rqe+++eqLaa+Pef +lGpL+KSs+epv+LTEsETEYv++c KH+F fk16294 633 RQEIFQEQLAAVPEFRGLGPLFKSSPEPVALTESETEYVIRCTKHTF 679 iEanHvVLQFditNTLpDqvLenVsVvaepseekeeyeedfivpapkLpy +nH+V+QFd+tNTL+Dq LenV+V++ep e+ ye+ ++vpa++Lpy fk16294 680 --TNHMVFQFDCTNTLNDQTLENVTVQMEPTEA---YEVLCYVPARSLPY 724 nqpGnvYvlleknvPFnisLDsnDPnLEsnnnsqtqtpedddeavsstFg nqpG++Y+l+ + p++d++av++tF+ fk16294 725 NQPGTCYTLVAL-------------------------PKEDPTAVACTFS 749 ntLkFtvKDcDPtTGePDSDeGYeDEYqlEdLEltvsDyiqpCivyksnF + +kFtvKDcDPtTGe D DeGYeDEY+lEdLE+tv+D+iq+ v+k nF fk16294 750 CMMKFTVKDCDPTTGETD-DEGYEDEYVLEDLEVTVADHIQK--VMKLNF 796 gsaWdqlgdeeWaeaeeTFqLSnvktledAVnklikaLgmqPlegSDkVP ++aWd++gde +e+eeTF+LS++ktle+AV++++k+Lgm+P+e+SDkVP fk16294 797 EAAWDEVGDE--FEKEETFTLSTIKTLEEAVGNIVKFLGMHPCERSDKVP 844 enkttHtLkLsGkfrgGgPikVLvrarLAlaqgtGVtmkltvRSeeedvA +nk+tHtL+L+G+frgG+ ++Lvr+rL l + Vtm++t+RS ee+++ fk16294 845 DNKNTHTLLLAGVFRGGH--DILVRSRLLLLDT--VTMQVTARSLEELPV 890 elviasVg<-* ++++asVg fk16294 891 DIILASVG 898 //