hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080811/iprscan-20080811-15103067/chunk_1/iprscan-20080811-15103067.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fk16360 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF01268.9.ls Formate--tetrahydrofolate ligase 1510.2 0 1 PF01268.9.fs Formate--tetrahydrofolate ligase 1508.2 0 1 PF02882.9.ls Tetrahydrofolate dehydrogenase/cyclohyd 363.9 2.3e-106 1 PF02882.9.fs Tetrahydrofolate dehydrogenase/cyclohyd 362.0 9e-106 1 PF00763.13.fs Tetrahydrofolate dehydrogenase/cyclohyd 228.2 9.4e-75 1 PF00763.13.ls Tetrahydrofolate dehydrogenase/cyclohyd 230.3 4e-66 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00763.13.ls 1/1 60 180 .. 1 120 [] 230.3 4e-66 PF00763.13.fs 1/1 60 180 .. 1 120 [] 228.2 9.4e-75 PF02882.9.fs 1/1 183 350 .. 1 169 [] 362.0 9e-106 PF02882.9.ls 1/1 183 350 .. 1 169 [] 363.9 2.3e-106 PF01268.9.fs 1/1 371 990 .] 1 621 [] 1508.2 0 PF01268.9.ls 1/1 371 990 .] 1 621 [] 1510.2 0 Alignments of top-scoring domains: PF00763.13.ls: domain 1 of 1, from 60 to 180: score 230.3, E = 4e-66 *->qIidGkalAqeiraelaneVqalkeakggfaPgLAvvLVGddPASnv +I++Gk+++ +ira+l+n+V++lke+++gf+P+LA+ +VG++ +Sn fk16360 60 EILNGKEISAQIRARLKNQVTQLKEQVPGFTPRLAILQVGNRDDSNL 106 YVrnKrKAaeevGidsklidLPesiteeeLLklIdqLNeDpsvhGILVQL Y++ K+KAaee+Gi++ +i+LP+++te+e++k+I +LNeD +vhG LVQL fk16360 107 YINVKLKAAEEIGIKATHIKLPRTTTESEVMKYITSLNEDSTVHGFLVQL 156 PLPc.kHiDerkilnaIdPeKDVD<-* PL+++++i+++ ++naI+PeKDVD fk16360 157 PLDSeNSINTEEVINAIAPEKDVD 180 PF00763.13.fs: domain 1 of 1, from 60 to 180: score 228.2, E = 9.4e-75 *->qIidGkalAqeiraelaneVqalkeakggfaPgLAvvLVGddPASnv +I++Gk+++ +ira+l+n+V++lke+++gf+P+LA+ +VG++ +Sn fk16360 60 EILNGKEISAQIRARLKNQVTQLKEQVPGFTPRLAILQVGNRDDSNL 106 YVrnKrKAaeevGidsklidLPesiteeeLLklIdqLNeDpsvhGILVQL Y++ K+KAaee+Gi++ +i+LP+++te+e++k+I +LNeD +vhG LVQL fk16360 107 YINVKLKAAEEIGIKATHIKLPRTTTESEVMKYITSLNEDSTVHGFLVQL 156 PLPc.kHiDerkilnaIdPeKDVD<-* PL+++++i+++ ++naI+PeKDVD fk16360 157 PLDSeNSINTEEVINAIAPEKDVD 180 PF02882.9.fs: domain 1 of 1, from 183 to 350: score 362.0, E = 9e-106 *->HPlNvGrLalGd.epgGfvPCTPaGimeLLkrygidlaGKnaVViGR + +N+GrLa+Gd +++ f+PCTP+G++eL+k++g+++aG++aVV+GR fk16360 183 TSINAGRLARGDlNDC-FIPCTPKGCLELIKETGVPIAGRHAVVVGR 228 SnIVGkPlAlLLlnagnATVTvcHSkTPkdLaeitrqADIlVvAvGkPnl S+IVG P+ LLl+ nATVT+cHSkT +L e + DIlVvA+G+P++ fk16360 229 SKIVGAPMHDLLLWN-NATVTTCHSKT-AHLDEEVNKGDILVVATGQPEM 276 vkadwvKpGAVVIDVGINRvdaskkgggk.LvGDVDFeevkekAsaITPV vk++w+KpGA+VID+GIN+v+++kk++g+++vGDV+++e+ke+As+ITPV fk16360 277 VKGEWIKPGAIVIDCGINYVPDDKKPNGRkVVGDVAYDEAKERASFITPV 326 PGGVGPMTvAMLlkNTleAAkrql<-* PGGVGPMTvAML++ T+e+Akr l fk16360 327 PGGVGPMTVAMLMQSTVESAKRFL 350 PF02882.9.ls: domain 1 of 1, from 183 to 350: score 363.9, E = 2.3e-106 *->HPlNvGrLalGd.epgGfvPCTPaGimeLLkrygidlaGKnaVViGR + +N+GrLa+Gd +++ f+PCTP+G++eL+k++g+++aG++aVV+GR fk16360 183 TSINAGRLARGDlNDC-FIPCTPKGCLELIKETGVPIAGRHAVVVGR 228 SnIVGkPlAlLLlnagnATVTvcHSkTPkdLaeitrqADIlVvAvGkPnl S+IVG P+ LLl+ nATVT+cHSkT +L e + DIlVvA+G+P++ fk16360 229 SKIVGAPMHDLLLWN-NATVTTCHSKT-AHLDEEVNKGDILVVATGQPEM 276 vkadwvKpGAVVIDVGINRvdaskkgggk.LvGDVDFeevkekAsaITPV vk++w+KpGA+VID+GIN+v+++kk++g+++vGDV+++e+ke+As+ITPV fk16360 277 VKGEWIKPGAIVIDCGINYVPDDKKPNGRkVVGDVAYDEAKERASFITPV 326 PGGVGPMTvAMLlkNTleAAkrql<-* PGGVGPMTvAML++ T+e+Akr l fk16360 327 PGGVGPMTVAMLMQSTVESAKRFL 350 PF01268.9.fs: domain 1 of 1, from 371 to 990: score 1508.2, E = 0 *->vpsDIdIaqaakpkpIkevAeeLgiqsdelELYGkyKAKvsldvler vpsDIdI++++kpkpI ++A+e+g+ s+e+ELYG++KAKv+l++ler fk16360 371 VPSDIDISRSCKPKPIGKLAREIGLLSEEVELYGETKAKVLLSALER 417 lkdkedGklVlVtaItPTPlGEGKsTttvGLvqALgakLgkkviaalReP lk+++dGk+V+Vt+ItPTPlGEGKsTtt+GLvqALga+L+++v+a++R+P fk16360 418 LKHRPDGKYVVVTGITPTPLGEGKSTTTIGLVQALGAHLYQNVFACVRQP 467 SlGPtfGiKGGAAGGGYaQViPMddiNLHlTGDiHAItaAnnLLAAliDn S+GPtfGiKGGAAGGGY+QViPM+++NLHlTGDiHAItaAnnL+AA+iD+ fk16360 468 SQGPTFGIKGGAAGGGYSQVIPMEEFNLHLTGDIHAITAANNLVAAAIDA 517 RhlhegnqknDkalfnRLvPrknGkRkFtdimqRRLkrLgieKtdPddLt R++he +q +DkalfnRLvP++nG+R+F+di++RRLkrLgieKtdP++Lt fk16360 518 RIFHELTQ-TDKALFNRLVPSVNGVRRFSDIQIRRLKRLGIEKTDPTTLT 566 pEEvnkFARLnIdpdtItwkRVvDlNDRaLRkitiGlggkekGitRetgF +EE+n+FARL+Idp+tItw+RV+D+NDR+LRkitiG++++ekG+tR+++F fk16360 567 DEEINRFARLDIDPETITWQRVLDTNDRFLRKITIGQAPTEKGHTRTAQF 616 DItVASEiMAiLaLatsleDlkERlgkmVvayskdgepVtaeDLevqGAL DI+VASEiMA+LaL+tsleD++ERlgkmVva+sk+gepV+aeDL+v+GAL fk16360 617 DISVASEIMAVLALTTSLEDMRERLGKMVVASSKKGEPVSAEDLGVSGAL 666 tlLlkDAIkPnLvQTLegTPvfvHaGPFANIAhGcsSviAdkvALKLvdy t+L+kDAIkPnL+QTLegTPvfvHaGPFANIAhG+sS+iAd++ALKLv++ fk16360 667 TVLMKDAIKPNLMQTLEGTPVFVHAGPFANIAHGNSSIIADQIALKLVGP 716 eGfvVTEAGFgadlGaEkFfdIKcRysGlkPdavViVATVRALKmhGGvp eGfvVTEAGFgad+G+EkFf+IKcRysGl+P++vV+VATVRALKmhGG+p fk16360 717 EGFVVTEAGFGADIGMEKFFNIKCRYSGLCPHVVVLVATVRALKMHGGGP 766 dvkaGkpLkkalatENveavekGvaNLekhIeNikkFGvPvVVAINaFet +v+aG+pL+ka+++EN+e+vekG++NL+k+IeN+++FG+PvVVA+NaF+t fk16360 767 TVTAGLPLPKAYIQENLELVEKGFSNLKKQIENARMFGIPVVVAVNAFKT 816 DTeaElalvkkacaeaGadvavsstvwaeGGkGaveLAkaVieacenkks DTe+El+l++++++e+Ga++av++t+waeGGkGa++LA+aV++a+++++s fk16360 817 DTESELDLISRLSREHGAFDAVKCTHWAEGGKGALALAQAVQRAAQAPSS 866 nfkvLYdvnlSieeKitkIakkiYgAdkvefskeAkkkieeyekqGfgnL f++LYd++l++e+Ki+ Ia+kiYgAd++e+++eA++k+e+y+kqGfgnL fk16360 867 -FQLLYDLKLPVEDKIRIIAQKIYGADDIELLPEAQHKAEVYTKQGFGNL 915 PIcmAKTqYSfSddptlkGaPtGFtltiRdvrlsaGAGfivaLtGeimtm PIcmAKT++S+S++p++kG+PtGF+l+iRd+r+s+GAGf+++L+G+++tm fk16360 916 PICMAKTHLSLSHNPEQKGVPTGFILPIRDIRASVGAGFLYPLVGTMSTM 965 PGLpkrpaaldidvd.edGeiiGLf<-* PGLp+rp+++did+d+e+++++GLf fk16360 966 PGLPTRPCFYDIDLDpETEQVNGLF 990 PF01268.9.ls: domain 1 of 1, from 371 to 990: score 1510.2, E = 0 *->vpsDIdIaqaakpkpIkevAeeLgiqsdelELYGkyKAKvsldvler vpsDIdI++++kpkpI ++A+e+g+ s+e+ELYG++KAKv+l++ler fk16360 371 VPSDIDISRSCKPKPIGKLAREIGLLSEEVELYGETKAKVLLSALER 417 lkdkedGklVlVtaItPTPlGEGKsTttvGLvqALgakLgkkviaalReP lk+++dGk+V+Vt+ItPTPlGEGKsTtt+GLvqALga+L+++v+a++R+P fk16360 418 LKHRPDGKYVVVTGITPTPLGEGKSTTTIGLVQALGAHLYQNVFACVRQP 467 SlGPtfGiKGGAAGGGYaQViPMddiNLHlTGDiHAItaAnnLLAAliDn S+GPtfGiKGGAAGGGY+QViPM+++NLHlTGDiHAItaAnnL+AA+iD+ fk16360 468 SQGPTFGIKGGAAGGGYSQVIPMEEFNLHLTGDIHAITAANNLVAAAIDA 517 RhlhegnqknDkalfnRLvPrknGkRkFtdimqRRLkrLgieKtdPddLt R++he +q +DkalfnRLvP++nG+R+F+di++RRLkrLgieKtdP++Lt fk16360 518 RIFHELTQ-TDKALFNRLVPSVNGVRRFSDIQIRRLKRLGIEKTDPTTLT 566 pEEvnkFARLnIdpdtItwkRVvDlNDRaLRkitiGlggkekGitRetgF +EE+n+FARL+Idp+tItw+RV+D+NDR+LRkitiG++++ekG+tR+++F fk16360 567 DEEINRFARLDIDPETITWQRVLDTNDRFLRKITIGQAPTEKGHTRTAQF 616 DItVASEiMAiLaLatsleDlkERlgkmVvayskdgepVtaeDLevqGAL DI+VASEiMA+LaL+tsleD++ERlgkmVva+sk+gepV+aeDL+v+GAL fk16360 617 DISVASEIMAVLALTTSLEDMRERLGKMVVASSKKGEPVSAEDLGVSGAL 666 tlLlkDAIkPnLvQTLegTPvfvHaGPFANIAhGcsSviAdkvALKLvdy t+L+kDAIkPnL+QTLegTPvfvHaGPFANIAhG+sS+iAd++ALKLv++ fk16360 667 TVLMKDAIKPNLMQTLEGTPVFVHAGPFANIAHGNSSIIADQIALKLVGP 716 eGfvVTEAGFgadlGaEkFfdIKcRysGlkPdavViVATVRALKmhGGvp eGfvVTEAGFgad+G+EkFf+IKcRysGl+P++vV+VATVRALKmhGG+p fk16360 717 EGFVVTEAGFGADIGMEKFFNIKCRYSGLCPHVVVLVATVRALKMHGGGP 766 dvkaGkpLkkalatENveavekGvaNLekhIeNikkFGvPvVVAINaFet +v+aG+pL+ka+++EN+e+vekG++NL+k+IeN+++FG+PvVVA+NaF+t fk16360 767 TVTAGLPLPKAYIQENLELVEKGFSNLKKQIENARMFGIPVVVAVNAFKT 816 DTeaElalvkkacaeaGadvavsstvwaeGGkGaveLAkaVieacenkks DTe+El+l++++++e+Ga++av++t+waeGGkGa++LA+aV++a+++++s fk16360 817 DTESELDLISRLSREHGAFDAVKCTHWAEGGKGALALAQAVQRAAQAPSS 866 nfkvLYdvnlSieeKitkIakkiYgAdkvefskeAkkkieeyekqGfgnL f++LYd++l++e+Ki+ Ia+kiYgAd++e+++eA++k+e+y+kqGfgnL fk16360 867 -FQLLYDLKLPVEDKIRIIAQKIYGADDIELLPEAQHKAEVYTKQGFGNL 915 PIcmAKTqYSfSddptlkGaPtGFtltiRdvrlsaGAGfivaLtGeimtm PIcmAKT++S+S++p++kG+PtGF+l+iRd+r+s+GAGf+++L+G+++tm fk16360 916 PICMAKTHLSLSHNPEQKGVPTGFILPIRDIRASVGAGFLYPLVGTMSTM 965 PGLpkrpaaldidvd.edGeiiGLf<-* PGLp+rp+++did+d+e+++++GLf fk16360 966 PGLPTRPCFYDIDLDpETEQVNGLF 990 //