hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090525/iprscan-20090525-15455067/chunk_1/iprscan-20090525-15455067.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ha00180 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00096.16.ls Zinc finger, C2H2 type 499.2 4.3e-147 18 PF00096.16.fs Zinc finger, C2H2 type 478.8 6.2e-141 19 PF01352.17.fs KRAB box 76.9 3.5e-21 1 PF01352.17.ls KRAB box 78.9 1.5e-20 1 PF01096.9.fs Transcription factor S-II (TFIIS) 57.7 3.6e-17 15 PF01286.9.fs XPA protein N-terminal 33.1 1.2e-08 9 PF07754.2.fs Domain of unknown function (DUF1610) 32.9 8.6e-08 10 PF04032.6.fs RNAse P Rpr2/Rpp21/SNM1 subunit domain 20.8 4.4e-06 10 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01352.17.fs 1/1 13 53 .. 1 41 [] 76.9 3.5e-21 PF01352.17.ls 1/1 13 53 .. 1 41 [] 78.9 1.5e-20 PF00096.16.ls 1/18 178 200 .. 1 24 [] 21.1 0.0037 PF00096.16.fs 2/19 178 197 .. 1 21 [. 26.3 2.7e-05 PF00096.16.ls 2/18 206 228 .. 1 24 [] 30.6 5.2e-06 PF00096.16.fs 3/19 206 228 .. 1 24 [] 28.6 7.1e-06 PF00096.16.ls 3/18 234 256 .. 1 24 [] 26.5 8.8e-05 PF00096.16.fs 4/19 234 256 .. 1 24 [] 24.5 7.3e-05 PF00096.16.ls 4/18 262 284 .. 1 24 [] 25.7 0.00015 PF00096.16.fs 5/19 262 284 .. 1 24 [] 23.7 0.00011 PF00096.16.ls 5/18 290 312 .. 1 24 [] 22.8 0.0011 PF00096.16.fs 7/19 318 340 .. 1 24 [] 31.4 1.4e-06 PF00096.16.ls 6/18 318 340 .. 1 24 [] 33.4 7.4e-07 PF00096.16.ls 7/18 346 368 .. 1 24 [] 27.8 3.6e-05 PF00096.16.fs 8/19 346 368 .. 1 24 [] 25.8 3.5e-05 PF00096.16.ls 8/18 374 396 .. 1 24 [] 25.2 0.00021 PF00096.16.fs 9/19 374 396 .. 1 24 [] 23.3 0.00015 PF00096.16.ls 9/18 402 424 .. 1 24 [] 29.6 1e-05 PF00096.16.fs 10/19 402 424 .. 1 24 [] 27.6 1.2e-05 PF00096.16.ls 10/18 430 452 .. 1 24 [] 31.5 2.7e-06 PF00096.16.fs 11/19 430 452 .. 1 24 [] 29.5 4.1e-06 PF00096.16.ls 11/18 458 480 .. 1 24 [] 30.4 5.9e-06 PF00096.16.fs 12/19 458 480 .. 1 24 [] 28.4 7.8e-06 PF00096.16.ls 13/18 513 535 .. 1 24 [] 32.5 1.4e-06 PF00096.16.fs 14/19 513 535 .. 1 24 [] 30.5 2.4e-06 PF00096.16.ls 14/18 541 563 .. 1 24 [] 27.9 3.4e-05 PF00096.16.fs 15/19 541 563 .. 1 24 [] 25.9 3.3e-05 PF00096.16.fs 16/19 569 591 .. 1 24 [] 26.3 2.6e-05 PF00096.16.ls 15/18 569 591 .. 1 24 [] 28.3 2.6e-05 PF00096.16.fs 17/19 597 619 .. 1 24 [] 28.4 8.1e-06 PF00096.16.ls 16/18 597 619 .. 1 24 [] 30.3 6.1e-06 PF00096.16.fs 18/19 625 647 .. 1 24 [] 33.3 4.8e-07 PF00096.16.ls 17/18 625 647 .. 1 24 [] 35.2 2e-07 PF00096.16.fs 19/19 658 680 .] 1 24 [] 33.3 4.8e-07 PF00096.16.ls 18/18 658 680 .] 1 24 [] 35.2 2e-07 Alignments of top-scoring domains: PF01352.17.fs: domain 1 of 1, from 13 to 53: score 76.9, E = 3.5e-21 *->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-* V+ eDVaV+Ft+EEW+lL+p Q+nLY+dVM+E+++nL ++ ha00180 13 VALEDVAVNFTREEWALLGPCQKNLYKDVMQETIRNLDCVV 53 PF01352.17.ls: domain 1 of 1, from 13 to 53: score 78.9, E = 1.5e-20 *->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-* V+ eDVaV+Ft+EEW+lL+p Q+nLY+dVM+E+++nL ++ ha00180 13 VALEDVAVNFTREEWALLGPCQKNLYKDVMQETIRNLDCVV 53 PF00096.16.ls: domain 1 of 18, from 178 to 200: score 21.1, E = 0.0037 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +CgksFs+ +nL+rH+ + ha00180 178 YDCK-ECGKSFSSLGNLQRHMAVQ 200 PF00096.16.fs: domain 2 of 19, from 178 to 197: score 26.3, E = 2.7e-05 *->ykCpfdCgksFsrksnLkrHl<-* y C+ +CgksFs+ +nL+rH+ ha00180 178 YDCK-ECGKSFSSLGNLQRHM 197 PF00096.16.ls: domain 2 of 18, from 206 to 228: score 30.6, E = 5.2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ Cgk+F +s L++H rtH ha00180 206 YKCK-LCGKAFFWPSLLHMHERTH 228 PF00096.16.fs: domain 3 of 19, from 206 to 228: score 28.6, E = 7.1e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ Cgk+F +s L++H rtH ha00180 206 YKCK-LCGKAFFWPSLLHMHERTH 228 PF00096.16.ls: domain 3 of 18, from 234 to 256: score 26.5, E = 8.8e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +C k+Fs s++ rH rtH ha00180 234 YECK-QCSKAFSFYSSYLRHERTH 256 PF00096.16.fs: domain 4 of 19, from 234 to 256: score 24.5, E = 7.3e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +C k+Fs s++ rH rtH ha00180 234 YECK-QCSKAFSFYSSYLRHERTH 256 PF00096.16.ls: domain 4 of 18, from 262 to 284: score 25.7, E = 0.00015 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +C k+F s++ rH rtH ha00180 262 YECK-QCSKAFPFYSSYLRHERTH 284 PF00096.16.fs: domain 5 of 19, from 262 to 284: score 23.7, E = 0.00011 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +C k+F s++ rH rtH ha00180 262 YECK-QCSKAFPFYSSYLRHERTH 284 PF00096.16.ls: domain 5 of 18, from 290 to 312: score 22.8, E = 0.0011 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +C k+F ++s+ H rtH ha00180 290 YKCK-QCSKAFPDSSSCLIHERTH 312 PF00096.16.fs: domain 7 of 19, from 318 to 340: score 31.4, E = 1.4e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+Fs +++L+rH tH ha00180 318 YTCK-QCGKAFSVSGSLQRHETTH 340 PF00096.16.ls: domain 6 of 18, from 318 to 340: score 33.4, E = 7.4e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+Fs +++L+rH tH ha00180 318 YTCK-QCGKAFSVSGSLQRHETTH 340 PF00096.16.ls: domain 7 of 18, from 346 to 368: score 27.8, E = 3.6e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cgk+F + ++++rH+ +H ha00180 346 YACQ-QCGKAFHHLGSFQRHMIRH 368 PF00096.16.fs: domain 8 of 19, from 346 to 368: score 25.8, E = 3.5e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cgk+F + ++++rH+ +H ha00180 346 YACQ-QCGKAFHHLGSFQRHMIRH 368 PF00096.16.ls: domain 8 of 18, from 374 to 396: score 25.2, E = 0.00021 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +Cgk F +s+L++H rtH ha00180 374 HKCK-ICGKGFDCPSSLQSHERTH 396 PF00096.16.fs: domain 9 of 19, from 374 to 396: score 23.3, E = 0.00015 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +Cgk F +s+L++H rtH ha00180 374 HKCK-ICGKGFDCPSSLQSHERTH 396 PF00096.16.ls: domain 9 of 18, from 402 to 424: score 29.6, E = 1e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+ s++s++++H+ +H ha00180 402 YECK-QCGKALSHRSSFRSHMIMH 424 PF00096.16.fs: domain 10 of 19, from 402 to 424: score 27.6, E = 1.2e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+ s++s++++H+ +H ha00180 402 YECK-QCGKALSHRSSFRSHMIMH 424 PF00096.16.ls: domain 10 of 18, from 430 to 452: score 31.5, E = 2.7e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +Cgk+F +s ++rH rtH ha00180 430 HKCK-VCGKAFVYPSVFQRHERTH 452 PF00096.16.fs: domain 11 of 19, from 430 to 452: score 29.5, E = 4.1e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +Cgk+F +s ++rH rtH ha00180 430 HKCK-VCGKAFVYPSVFQRHERTH 452 PF00096.16.ls: domain 11 of 18, from 458 to 480: score 30.4, E = 5.9e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+++ +s+L+rH tH ha00180 458 YKCK-QCGKAYRISSSLRRHETTH 480 PF00096.16.fs: domain 12 of 19, from 458 to 480: score 28.4, E = 7.8e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+++ +s+L+rH tH ha00180 458 YKCK-QCGKAYRISSSLRRHETTH 480 PF00096.16.ls: domain 13 of 18, from 513 to 535: score 32.5, E = 1.4e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+Fsr L rH+rtH ha00180 513 YECK-ECGKAFSRFRYLSRHKRTH 535 PF00096.16.fs: domain 14 of 19, from 513 to 535: score 30.5, E = 2.4e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+Fsr L rH+rtH ha00180 513 YECK-ECGKAFSRFRYLSRHKRTH 535 PF00096.16.ls: domain 14 of 18, from 541 to 563: score 27.9, E = 3.4e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ C k+F + +nLk H r+H ha00180 541 YECK-TCRKAFGHYDNLKVHERIH 563 PF00096.16.fs: domain 15 of 19, from 541 to 563: score 25.9, E = 3.3e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ C k+F + +nLk H r+H ha00180 541 YECK-TCRKAFGHYDNLKVHERIH 563 PF00096.16.fs: domain 16 of 19, from 569 to 591: score 26.3, E = 2.6e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+Fs + rH r+H ha00180 569 YECK-ECGKAFSWLTCFLRHERIH 591 PF00096.16.ls: domain 15 of 18, from 569 to 591: score 28.3, E = 2.6e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+Fs + rH r+H ha00180 569 YECK-ECGKAFSWLTCFLRHERIH 591 PF00096.16.fs: domain 17 of 19, from 597 to 619: score 28.4, E = 8.1e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+Cp +Cgk+F+++ L+ H +tH ha00180 597 YECP-QCGKAFTHSRFLQGHEKTH 619 PF00096.16.ls: domain 16 of 18, from 597 to 619: score 30.3, E = 6.1e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+Cp +Cgk+F+++ L+ H +tH ha00180 597 YECP-QCGKAFTHSRFLQGHEKTH 619 PF00096.16.fs: domain 18 of 19, from 625 to 647: score 33.3, E = 4.8e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F + s+L+rH++tH ha00180 625 YECK-ECGKAFASLSSLHRHKKTH 647 PF00096.16.ls: domain 17 of 18, from 625 to 647: score 35.2, E = 2e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F + s+L+rH++tH ha00180 625 YECK-ECGKAFASLSSLHRHKKTH 647 PF00096.16.fs: domain 19 of 19, from 658 to 680: score 33.3, E = 4.8e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F + s+L+rH++tH ha00180 658 YECK-ECGKAFASLSSLHRHKKTH 680 PF00096.16.ls: domain 18 of 18, from 658 to 680: score 35.2, E = 2e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F + s+L+rH++tH ha00180 658 YECK-ECGKAFASLSSLHRHKKTH 680 //