hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20090525/iprscan-20090525-15455067/chunk_1/iprscan-20090525-15455067.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ha00180 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00355 454.2 6.4e-132 19 SM00349 58.8 6.9e-13 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00349 1/1 13 65 .. 1 62 [] 58.8 6.9e-13 SM00355 1/19 140 172 .. 1 23 [] 2.9 1.5e+02 SM00355 2/19 178 198 .. 1 23 [] 18.4 1 SM00355 3/19 206 228 .. 1 23 [] 25.0 0.011 SM00355 4/19 234 256 .. 1 23 [] 23.3 0.034 SM00355 5/19 262 284 .. 1 23 [] 24.1 0.019 SM00355 6/19 290 312 .. 1 23 [] 24.5 0.015 SM00355 7/19 318 340 .. 1 23 [] 28.4 0.00098 SM00355 8/19 346 368 .. 1 23 [] 28.4 0.00098 SM00355 9/19 374 396 .. 1 23 [] 26.1 0.0048 SM00355 10/19 402 424 .. 1 23 [] 27.1 0.0024 SM00355 11/19 430 452 .. 1 23 [] 26.7 0.0032 SM00355 12/19 458 480 .. 1 23 [] 25.0 0.011 SM00355 13/19 486 507 .. 1 23 [] 8.5 35 SM00355 14/19 513 535 .. 1 23 [] 28.1 0.0012 SM00355 15/19 541 563 .. 1 23 [] 24.8 0.012 SM00355 16/19 569 591 .. 1 23 [] 26.5 0.0037 SM00355 17/19 597 619 .. 1 23 [] 27.1 0.0024 SM00355 18/19 625 647 .. 1 23 [] 29.7 0.00041 SM00355 19/19 658 680 .] 1 23 [] 29.7 0.00041 Alignments of top-scoring domains: SM00349: domain 1 of 1, from 13 to 65: score 58.8, E = 6.9e-13 *->VtFeDVAVdFsqEEWeqLDpaQrnLYRdVMlENYsnLvSLGgfqvsk V++eDVAV F++EEW +L p Q+nLY+dVM+E+ +n L+ + v k ha00180 13 VALEDVAVNFTREEWALLGPCQKNLYKDVMQETIRN---LD-CVVMK 55 pdliskLEqgeEpwi<-* ++ q E + ha00180 56 -----WKDQNIEDQY 65 SM00355: domain 1 of 19, from 140 to 172: score 2.9, E = 1.5e+02 *->ykCpigCg..........ksfssk.aLkrHmrvH<-* ++ ++ Cg++++++++++k fs +++++ H r H ha00180 140 HEYHE-CGekpdthkqrgKAFSYHnSFQTHERLH 172 SM00355: domain 2 of 19, from 178 to 198: score 18.4, E = 1 *->ykCpigCgksfssk.aLkrHmrvH<-* y C++ Cgksfss ++L+rHm ha00180 178 YDCKE-CGKSFSSLgNLQRHMA-- 198 SM00355: domain 3 of 19, from 206 to 228: score 25.0, E = 0.011 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk f +++ L H r+H ha00180 206 YKCKL-CGKAFFWPsLLHMHERTH 228 SM00355: domain 4 of 19, from 234 to 256: score 23.3, E = 0.034 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ C+k fs ++++ rH r+H ha00180 234 YECKQ-CSKAFSFYsSYLRHERTH 256 SM00355: domain 5 of 19, from 262 to 284: score 24.1, E = 0.019 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ C+k f+ ++++ rH r+H ha00180 262 YECKQ-CSKAFPFYsSYLRHERTH 284 SM00355: domain 6 of 19, from 290 to 312: score 24.5, E = 0.015 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ C+k f++ ++ H r+H ha00180 290 YKCKQ-CSKAFPDSsSCLIHERTH 312 SM00355: domain 7 of 19, from 318 to 340: score 28.4, E = 0.00098 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk fs ++L+rH +H ha00180 318 YTCKQ-CGKAFSVSgSLQRHETTH 340 SM00355: domain 8 of 19, from 346 to 368: score 28.4, E = 0.00098 *->ykCpigCgksfssk.aLkrHmrvH<-* y C++ Cgk f++ ++++rHm +H ha00180 346 YACQQ-CGKAFHHLgSFQRHMIRH 368 SM00355: domain 9 of 19, from 374 to 396: score 26.1, E = 0.0048 *->ykCpigCgksfssk.aLkrHmrvH<-* +kC+i Cgk f +++L+ H r+H ha00180 374 HKCKI-CGKGFDCPsSLQSHERTH 396 SM00355: domain 10 of 19, from 402 to 424: score 27.1, E = 0.0024 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk s++++++ Hm +H ha00180 402 YECKQ-CGKALSHRsSFRSHMIMH 424 SM00355: domain 11 of 19, from 430 to 452: score 26.7, E = 0.0032 *->ykCpigCgksfssk.aLkrHmrvH<-* +kC++ Cgk f ++ ++rH r+H ha00180 430 HKCKV-CGKAFVYPsVFQRHERTH 452 SM00355: domain 12 of 19, from 458 to 480: score 25.0, E = 0.011 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk ++ ++L+rH +H ha00180 458 YKCKQ-CGKAYRISsSLRRHETTH 480 SM00355: domain 13 of 19, from 486 to 507: score 8.5, E = 35 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ gk + + ++++H +H ha00180 486 YKCKL--GKACIDFcSFQNHKTTH 507 SM00355: domain 14 of 19, from 513 to 535: score 28.1, E = 0.0012 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk fs+ + L rH r+H ha00180 513 YECKE-CGKAFSRFrYLSRHKRTH 535 SM00355: domain 15 of 19, from 541 to 563: score 24.8, E = 0.012 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C+ C k f ++++Lk H r+H ha00180 541 YECKT-CRKAFGHYdNLKVHERIH 563 SM00355: domain 16 of 19, from 569 to 591: score 26.5, E = 0.0037 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk fs+ + + rH r+H ha00180 569 YECKE-CGKAFSWLtCFLRHERIH 591 SM00355: domain 17 of 19, from 597 to 619: score 27.1, E = 0.0024 *->ykCpigCgksfssk.aLkrHmrvH<-* y+Cp+ Cgk f++ + L+ H ++H ha00180 597 YECPQ-CGKAFTHSrFLQGHEKTH 619 SM00355: domain 18 of 19, from 625 to 647: score 29.7, E = 0.00041 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk f s ++L rH ++H ha00180 625 YECKE-CGKAFASLsSLHRHKKTH 647 SM00355: domain 19 of 19, from 658 to 680: score 29.7, E = 0.00041 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk f s ++L rH ++H ha00180 658 YECKE-CGKAFASLsSLHRHKKTH 680 //