hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-15450681/chunk_1/iprscan-20080811-15450681.nocrc
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Query sequence: ha00462
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00134.13.ls Cyclin, N-terminal domain                      174.2      3e-49   1
PF00134.13.fs Cyclin, N-terminal domain                      172.3    6.2e-49   1
PF02984.9.fs Cyclin, C-terminal domain                       83.8    2.1e-23   1
PF02984.9.ls Cyclin, C-terminal domain                       85.7    1.3e-22   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00134.13.fs   1/1     114   241 ..     1   146 []   172.3  6.2e-49
PF00134.13.ls   1/1     114   241 ..     1   146 []   174.2    3e-49
PF02984.9.fs   1/1     243   370 ..     1   136 []    83.8  2.1e-23
PF02984.9.ls   1/1     243   370 ..     1   136 []    85.7  1.3e-22

Alignments of top-scoring domains:
PF00134.13.fs: domain 1 of 1, from 114 to 241: score 172.3, E = 6.2e-49
                   *->diyaylrelEeeylplpppdyldqqpqpdsidinpkMRaiLvDWLve
                      +++++l+  Ee+ylp+ +++ +  q      di+p MR+++++W+ e
     ha00462   114    RVLQNLLTIEERYLPQCSYFKCV-QK-----DIQPYMRRMVATWMLE 154  

                   VhekfkLlpeTLyLavnylDRFLskkpvpklkvprkklQLvGvtaLliAs
                   V+e+ k+  e+++La+nylDRFL+ + +    +p+++lQL+G++++++As
     ha00462   155 VCEEQKCEEEVFPLAMNYLDRFLAGV-P----TPKSHLQLLGAVCMFLAS 199  

                   KyEEiksdvypPevedfvyitasDnqaytkkeilrMEkliLktLkfdls<
                   K+ E+    +p + e ++ +t  Dn + +++e+l++E+ +L++Lk++l+ 
     ha00462   200 KLKET----SPLTAEKLCIYT--DN-SIKPQELLEWELVVLGKLKWNLA  241  

                   -*
                     
     ha00462     -    -    

PF00134.13.ls: domain 1 of 1, from 114 to 241: score 174.2, E = 3e-49
                   *->diyaylrelEeeylplpppdyldqqpqpdsidinpkMRaiLvDWLve
                      +++++l+  Ee+ylp+ +++ +  q      di+p MR+++++W+ e
     ha00462   114    RVLQNLLTIEERYLPQCSYFKCV-QK-----DIQPYMRRMVATWMLE 154  

                   VhekfkLlpeTLyLavnylDRFLskkpvpklkvprkklQLvGvtaLliAs
                   V+e+ k+  e+++La+nylDRFL+ + +    +p+++lQL+G++++++As
     ha00462   155 VCEEQKCEEEVFPLAMNYLDRFLAGV-P----TPKSHLQLLGAVCMFLAS 199  

                   KyEEiksdvypPevedfvyitasDnqaytkkeilrMEkliLktLkfdls<
                   K+ E+    +p + e ++ +t  Dn + +++e+l++E+ +L++Lk++l+ 
     ha00462   200 KLKET----SPLTAEKLCIYT--DN-SIKPQELLEWELVVLGKLKWNLA  241  

                   -*
                     
     ha00462     -    -    

PF02984.9.fs: domain 1 of 1, from 243 to 370: score 83.8, E = 2.1e-23
                   *->PTPysFLrrflkaaqlkdksPvdqeeltlakyLlELslldydfflky
                      +TP++F++++l++++ + +   +++++++a++++ L+ +d +f ++y
     ha00462   243    VTPHDFIEHILRKLPQQRE--KLSLIRKHAQTFIALCATDFKF-AMY 286  

                   pPSmiAAaAvylArctLnkss.sGnnppWtetLehytglqYseedlkeCv
                   pPSmiA+++v +A+c L+++ ++  ++   + L+  + ++      ++C+
     ha00462   287 PPSMIATGSVGAAICGLQQDEeV--SSLTCDALTELLAKI--TNTDVDCL 332  

                   kllvelhlnapesklkavreKYssskfgkvssltppsssl<-*
                   k+++e+++++  ++l++ r  + + + +k   +  ++s++   
     ha00462   333 KACQEQIEAVLLNSLQQYR--QDQRDGSKSEDELDQASTP    370  

PF02984.9.ls: domain 1 of 1, from 243 to 370: score 85.7, E = 1.3e-22
                   *->PTPysFLrrflkaaqlkdksPvdqeeltlakyLlELslldydfflky
                      +TP++F++++l++++ + +   +++++++a++++ L+ +d +f ++y
     ha00462   243    VTPHDFIEHILRKLPQQRE--KLSLIRKHAQTFIALCATDFKF-AMY 286  

                   pPSmiAAaAvylArctLnkss.sGnnppWtetLehytglqYseedlkeCv
                   pPSmiA+++v +A+c L+++ ++  ++   + L+  + ++      ++C+
     ha00462   287 PPSMIATGSVGAAICGLQQDEeV--SSLTCDALTELLAKI--TNTDVDCL 332  

                   kllvelhlnapesklkavreKYssskfgkvssltppsssl<-*
                   k+++e+++++  ++l++ r  + + + +k   +  ++s++   
     ha00462   333 KACQEQIEAVLLNSLQQYR--QDQRDGSKSEDELDQASTP    370  

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