hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080811/iprscan-20080811-16023805/chunk_1/iprscan-20080811-16023805.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ha00575 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00122.10.fs E1-E2 ATPase 53.9 3.7e-16 1 PF00122.10.ls E1-E2 ATPase 26.1 7.9e-11 1 PF00702.16.fs haloacid dehalogenase-like hydrolase 33.8 2.5e-09 2 PF00702.16.ls haloacid dehalogenase-like hydrolase 27.0 6e-05 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00122.10.ls 1/1 262 503 .. 1 245 [] 26.1 7.9e-11 PF00122.10.fs 1/1 299 387 .. 39 125 .. 53.9 3.7e-16 PF00702.16.fs 1/2 507 765 .. 1 110 [. 24.7 9.8e-07 PF00702.16.ls 1/1 507 899 .. 1 183 [] 27.0 6e-05 Alignments of top-scoring domains: PF00122.10.ls: domain 1 of 1, from 262 to 503: score 26.1, E = 7.9e-11 *->villivllnatlefyqesrAekAleaLkklvpptAtVlRdGgkeeei i+li ++ +l+ y ++ ++ l+ kl + + G +ee + ha00575 262 CIFLISSISICLSLYKTRKQSQTLRDMVKLSMRVCVCRPGG-EEEWV 307 paeeLvpGDiVev.kpGdrVPADgrvvegestLkVDESaLTGESlPVeKh +++eLvpGD +++++G +P D+ +v+ge+ +V+ES+LTGES+PV K ha00575 308 DSSELVPGDCLVLpQEGGLMPCDAALVAGEC--MVNESSLTGESIPVLK- 354 sdvvtp.....dnp.lergnmVfaGTlvvsGsltg......vVtatGddT +++p++ ++ +++ +r+ ++f GTl+++ +++++++ vVt+tG T ha00575 355 --TALPeglgpYCAeTHRRHTLFCGTLILQARAYVgphvlaVVTRTGFCT 402 flgkIakLVeeAqssktPlQrlldkfgkiltpvililavlvfiiwllrnf + g LV++ ++ P+ + k ++ ++ + +la+l i+ +++ ha00575 403 AKG---GLVSSILHPR-PINFKFYKHSMKFVAALSVLALLGTIYSIFI-- 446 naafggswlegllyalifavallVaAcPegLplvvtvalalGtgrmAkkg + ++ + +l +i+a+ l+ + +P +Lp++ tv+ + + +r+ ++g ha00575 447 ---LYRNRV-PLNEIVIRALDLVTVVVPPALPAAMTVCTLYAQSRLRRQG 492 aLVKglpAvEt<-* + + + ha00575 493 IFCIHPLRINL 503 PF00122.10.fs: domain 1 of 1, from 299 to 387: score 53.9, E = 3.7e-16 *->RdGgkeeeipaeeLvpGDiVev.kpGdrVPADgrvvegestLkVDES R Gg+ee ++++eLvpGD +++++G +P D+ +v+ge+ +V+ES ha00575 299 RPGGEEEWVDSSELVPGDCLVLpQEGGLMPCDAALVAGEC--MVNES 343 aLTGESlPVeKhsdvvtp.....dnp.lergnmVfaGTlvvsGsltg<-* +LTGES+PV K +++p++ ++ +++ +r+ ++f GTl+++ ++++ ha00575 344 SLTGESIPVLK---TALPeglgpYCAeTHRRHTLFCGTLILQARAYV 387 PF00702.16.fs: domain 1 of 2, from 507 to 765: score 24.7, E = 9.8e-07 *->ikavvFDkDGTLtdgk......eppiaeaiveaaaelgl.......l + +v+FDk+GTLt++ + + +p+ +a+ + +e + + ++ + ha00575 507 LQLVCFDKTGTLTEDGldvmgvVPLKGQAFLPLVPEPRRlpvgpllR 553 pleevekllgrgl.g......erilleggltaell............... +l+ ++l + ++ +++ +++++++ g++ e+ + ++ ++ ha00575 554 ALATCHALSRLQDtPvgdpmdLKMVESTGWVLEEEpaadsafgtqvlavm 603 .................................................. +++ ++ ++++ + + ++ + ++ + + ++ + ++ ha00575 604 rpplwepqlqameeppvpvsvlhrfpfssalqrmsvvvawpgatqpeayv 653 .................................................. +++++ + ++++ +++ + + + + +++ ++ ++ + ha00575 654 kgspelvaglcnpetvptdfaqmlqsytaagyrvvalaskplptvpslea 703 ...........d.evlglial.dklypgarealkaLkrrGikvailTggd ++++ ++d +lgl++ + l+p + ++++aL+r i+ +++Tg++ ha00575 704 aqqltrdtvegDlSLLGLLVMrNLLKPQTTPVIQALRRTRIRAVMVTGDN 753 r.naeallealg<-* ++a+ +++ +g ha00575 754 LqTAVTVARGCG 765 PF00702.16.ls: domain 1 of 1, from 507 to 899: score 27.0, E = 6e-05 *->ikavvFDkDGTLtdgk......eppiaeaiveaaaelgl.......l + +v+FDk+GTLt++ + + +p+ +a+ + +e + + ++ + ha00575 507 LQLVCFDKTGTLTEDGldvmgvVPLKGQAFLPLVPEPRRlpvgpllR 553 pleevekllgrgl.g......erilleggltaell............... +l+ ++l + ++ +++ +++++++ g++ e+ + ++ ++ ha00575 554 ALATCHALSRLQDtPvgdpmdLKMVESTGWVLEEEpaadsafgtqvlavm 603 .................................................. +++ ++ ++++ + + ++ + ++ + + ++ + ++ ha00575 604 rpplwepqlqameeppvpvsvlhrfpfssalqrmsvvvawpgatqpeayv 653 .................................................. +++++ + ++++ +++ + + + + +++ ++ ++ + ha00575 654 kgspelvaglcnpetvptdfaqmlqsytaagyrvvalaskplptvpslea 703 ...........d.evlglial.dklypgarealkaLkrrGikvailTggd ++++ ++d +lgl++ + l+p + ++++aL+r i+ +++Tg++ ha00575 704 aqqltrdtvegDlSLLGLLVMrNLLKPQTTPVIQALRRTRIRAVMVTGDN 753 r.naeallealgla.lfdviidsdevggvgpivvgKPkpeifllalerlg ++a+ +++ +g + ++++ +++ +g P+ fl ha00575 754 LqTAVTVARGCG-MvAPQEHLIIVHAT---HPERGQPASLEFLPMESPTA 799 vkpeevg........................................... v+++ +++++ + + ++++++++ ++++ + ++ ++ ++ + ha00575 800 VNGV--Kdpdqaasytvepdprsrhlalsgptfgiivkhfpkllpkvlvq 847 ......................pe.vlmVGDgvnDapalaaAGvgvamgn ++ + ++++++ + ++ v m GDg nD al+aA+vg+ + ha00575 848 gtvfarmapeqktelvcelqklQYcVGMCGDGANDCGALKAADVGISLSQ 897 gg<-* + ha00575 898 AE 899 //