hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/TIGRFAMs_HMM.LIB.bin Sequence file: /db/iprscan/tmp/20080811/iprscan-20080811-16023805/chunk_1/iprscan-20080811-16023805.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ha00575 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- TIGR01657 P-ATPase-V: P-type ATPase of unknown pu 2157.3 0 1 TIGR01494 ATPase_P-type: ATPase, P-type (transpor 383.2 1.3e-112 4 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- TIGR01657 1/1 37 1123 .. 1 1350 [] 2157.3 0 TIGR01494 1/4 262 532 .. 1 236 [. 167.4 1.2e-47 TIGR01494 4/4 850 966 .. 365 478 .] 130.1 2e-36 Alignments of top-scoring domains: TIGR01657: domain 1 of 1, from 37 to 1123: score 2157.3, E = 0 *->dktigisaYktspfkliiylvtlvltlgLvlLlltWkpewkvKltyv ++++++s+Y++sp+++i+y+v++++++g++lLl++Wkp w+v+l+++ ha00575 37 VSSVRLSGYCGSPWRVIGYHVVVWMMAGIPLLLFRWKPLWGVRLRLR 83 pvsnedaetvvivtpdevk.sWqlFevqvtvlsgsdeivelsnkslsndl p+++++aet+vi+++d++++sWqlF+vqv++++++++++e+s++s+++d+ ha00575 84 PCNLAHAETLVIEIRDKEDsSWQLFTVQVQTEAIGEGSLEPSPQSQAEDG 133 elenaveageepiyfdfrkqrfsyeekeqkqkRvLryFeyrsvkyifspl ++++av+a++e++++d++++++s+ e k RvLry+++++++yi++++ ha00575 134 RSQAAVGAVPEGAWKDTAQLHKSE---EAK--RVLRYYLFQGQRYIWIET 178 pylfkelsnLdfgdyskcagesnfGLttgeiakrkalYGkNeieipvpsf +++f+++s+Ld+g++++++++s++GL+++++++rka+YG+N+i+ipv+s+ ha00575 179 QQAFYQVSLLDHGRSCDDVHRSRHGLSLQDQMVRKAIYGPNVISIPVKSY 228 leLLkeEvlaPFYvFQvFSViLWllDEYyYYalcivfmsvlsivlsvyqi ++LL++E+l+P+Y+FQ+FS++LWl+D+Yy+Yalci+++s++si+ls+y++ ha00575 229 PQLLVDEALNPYYGFQAFSIALWLADHYYWYALCIFLISSISICLSLYKT 278 rkqlqeLrdmvhkptqsVeViRnggQGYkwetiaSdeLVPGDivsiprpt rkq+q+Lrdmv+ + ++V+V+R+gg ++e+++S+eLVPGD++++p + ha00575 279 RKQSQTLRDMVKLS-MRVCVCRPGG---EEEWVDSSELVPGDCLVLP-Q- 322 qtGaeeklmPcDavLLsGsCIVNESmLTGESVPvlKvplpdesvdvegdd e++lmPcDa+L++G+C+VNES+LTGES+PvlK++lp+ g++ ha00575 323 ----EGGLMPCDAALVAGECMVNESSLTGESIPVLKTALPE------GLG 362 deklqlketskkHvLFgGTkvLQirpypgksdslkppdtgvlAiVvRTGF ++++et+++H+LF+GT +LQ+r+y+g + +vlA+V+RTGF ha00575 363 ---PYCAETHRRHTLFCGTLILQARAYVG--------P-HVLAVVTRTGF 400 sTsKGqLvRsiLYPkprvfkfykdsfkFilfLavlAliGfiYviielikn +T+KG+Lv+siL+P+p++fkfyk+s+kF+++L+vlAl+G+iY+i++l++n ha00575 401 CTAKGGLVSSILHPRPINFKFYKHSMKFVAALSVLALLGTIYSIFILYRN 450 gsrskgkiiLrsLDIiTivVPPaLPaaLsvginnaLaRLkkkgIfCisPf + +++++i++r+LD++T+vVPPaLPaa++v++++a++RL+++gIfCi+P ha00575 451 R-VPLNEIVIRALDLVTVVVPPALPAAMTVCTLYAQSRLRRQGIFCIHPL 499 RInfAGkidvvCFDKTGTLTEDgLdlrGVqglsgnqereikkvkLlkdiR RIn++Gk+++vCFDKTGTLTEDgLd++GV++l+g++ ha00575 500 RINLGGKLQLVCFDKTGTLTEDGLDVMGVVPLKGQA-------------- 535 qvFlkivtedsssldslvpsetvkalAtCHsLtkleggkLvGDPLDlkmf Fl++v+e++ +l+++++++alAtCH+L++l++ ++vGDP+Dlkm+ ha00575 536 --FLPLVPEPR----RLPVGPLLRALATCHALSRLQD-TPVGDPMDLKMV 578 eatgWtleedFqKRAFHSLYEGReeddesalptsilpaVvrPpkqLLPls e+tgW+lee e++++sa++t++l aV+rPp l+ ha00575 579 ESTGWVLEE--------------EPAADSAFGTQVL-AVMRPP-----LW 608 epNrelkltddppsqelsiirrFeFsSaLqRMSVivstnderspdfklma ep +l+++++pp +++s+++rF+FsSaLqRMSV+v+++++++p+ a ha00575 609 EP--QLQAMEEPP-VPVSVLHRFPFSSALQRMSVVVAWPGATQPE----A 651 fvKGAPEtIqslcspetVPsdyqevlksytreGyRViAlAsKeLptkltl +vKG+PE++++lc+petVP+d++++l+syt++GyRV+AlAsK+Lpt+++l ha00575 652 YVKGSPELVAGLCNPETVPTDFAQMLQSYTAAGYRVVALASKPLPTVPSL 701 qkaqdlsRdavEsnLtFlGfiVfenpLKpdTkeVIkeLkrAniRtvMiTG ++aq+l+Rd+vE++L++lG++V++n LKp+T++VI++L+r++iR+vM+TG ha00575 702 EAAQQLTRDTVEGDLSLLGLLVMRNLLKPQTTPVIQALRRTRIRAVMVTG 751 DNlLTAvsVArecGivepsnvlilaeaeppesgkpaqikfevidsnsssd DNl+TAv+VAr+cG+v+p+++li+++a++pe+g+pa+++f +++s ha00575 752 DNLQTAVTVARGCGMVAPQEHLIIVHATHPERGQPASLEFLPMES----- 796 EviEDDAsvsismCsstWKGssEtqvipiastqveiPvklgkdSyledll p+a+++v++P+++++++ +e+++ ha00575 797 ---------------------------PTAVNGVKDPDQAASYT-VEPDP 818 asryhLAlsGkafavLqahsptdhiSFKPEWVKmQDKSVQKIIelllkLl +sr hLAlsG++f+++++h+p +ll+k+l ha00575 819 RSR-HLALSGPTFGIIVKHFP----------------------KLLPKVL 845 lhttVFARmaPdQKetlvelLqkldYtVgMCGDGANDCGALKqADVGISL +++tVFARmaP+QK++lv++Lqkl+Y+VgMCGDGANDCGALK+ADVGISL ha00575 846 VQGTVFARMAPEQKTELVCELQKLQYCVGMCGDGANDCGALKAADVGISL 895 seakepkklserrrreGmKmmYikdkeklsnsPlepvsktikqlfePGPK s+a ha00575 896 SQA----------------------------------------------- 898 nPHYLKALessktkipPeerkateeeLqrkklakvlsdLeneeGDarsaP ha00575 - -------------------------------------------------- - lvKLGeASvAAPFTSKlaSIsCVpnVIrEGRcaLvTSfqmFKymaLysLi eASv++PFTS++aSI+CVp+VIrEGRc+L+TSf++FKymaLysL+ ha00575 899 -----EASVVSPFTSSMASIECVPMVIREGRCSLDTSFSVFKYMALYSLT 943 qfysvsiLYligsnlgDgQFltidLllGifvvallmSrnkPlkkLskeRP qf+sv+iLY+i++nlgD+QFl+idL++ +++va+lmSr++P+ +L+++RP ha00575 944 QFISVLILYTINTNLGDLQFLAIDLVI-TTTVAVLMSRTGPALVLGRVRP 992 psnLfSvylltSvliQfvlhilsqvylvfelhkqpwykpeepkDArnttG p++L+Sv++l+S+l+Q+vl++++q++++f++ +qpw++p++ ha00575 993 PGALLSVPVLSSLLLQMVLVTGVQLGGYFLTLAQPWFVPLNR-------- 1034 GFWnsHvDnlvdlekenvpsleNTvlFfvSsfqYlitaivnskGpPFrep ++++++n+p++eNTv+F++SsfqYli+a+++skG+PFr+p ha00575 1035 ----------TVAAPDNLPNYENTVVFSLSSFQYLILAAAVSKGAPFRRP 1074 lykNkpfvysllGLIYtillaiillllldesphlgrilqivplpqeFrsk ly+N+pf+++l+ + l++++++l+l+++ +g+++++++++++F+++ ha00575 1075 LYTNVPFLVALA----L-LSSVLVGLVLVPGLLQGPLALRNITDTGFKLL 1119 Llia<-* Ll++ ha00575 1120 LLGL 1123 TIGR01494: domain 1 of 4, from 262 to 532: score 167.4, E = 1.2e-47 *->viliivllfvlletlqkeaaedalrslkdkelnpqkvtvlrng.gve +i +i +++++l+ + +++ +++lr + + l ++++++ +g++++ ha00575 262 CIFLISSISICLSLYKTRKQSQTLRDMVK--LSMRVCVCRPGGeEEW 306 isskdlvvGDiVlv.kkGdivPADgvLLsgscyVdessLTGEsnpvlKtd ++s++lv+GD+++++++G+ P+D L++g+c+V+essLTGEs pvlKt ha00575 307 VDSSELVPGDCLVLpQEGGLMPCDAALVAGECMVNESSLTGESIPVLKTA 356 ap..........fagtynfnGtltlkvs......kiavvvytgfektplq +p++ ++ ++++++++f+Gtl+l+ + +++++avv++tgf++++ ha00575 357 LPeglgpycaetHRRHTLFCGTLILQARayvgphVLAVVTRTGFCTAKGG 406 rkldrl............afifilfllllalsvflltliglwt....ffk + + l++++ + + ++++ f+ +l +lal++ +++++ l++++ + + ha00575 407 LVSSILhprpinfkfykhSMKFVAALSVLALLGTIYSIFILYRnrvpLNE 456 iflralillviaiPiaLpvavtialavgdkrma...ilvrslnalEelGq i++ral+l+++++P+aLp+a+t++++++++r+ +++i++ ++ +++ G+ ha00575 457 IVIRALDLVTVVVPPALPAAMTVCTLYAQSRLRrqgIFCIHPLRINLGGK 506 vdyicsDKTGTLTenkmtfkkvyigg<-* ++ +c+DKTGTLTe+++++++v++ + ha00575 507 LQLVCFDKTGTLTEDGLDVMGVVPLK 532 TIGR01494: domain 4 of 4, from 850 to 966: score 130.1, E = 2e-36 *->lfARvsPeqKaeiVellqkrgaiVamiGDGaNDapALkaADVGiaig +fAR++PeqK e+V+ lqk +++V+m+GDGaND++ALkaADVGi+++ ha00575 850 VFARMAPEQKTELVCELQKLQYCVGMCGDGANDCGALKAADVGISLS 896 .AkaaaDivltd..dnlslivlllvhGRwtykrikklilyalyynlilii +A+a+ ++t++ ++ ++++++++GR+++++++++++y+++y+l+++i ha00575 897 qAEASVVSPFTSsmASIECVPMVIREGRCSLDTSFSVFKYMALYSLTQFI 946 llfvlsvinllftslpalal<-* ++++l+ in+ + +l +la+ ha00575 947 SVLILYTINTNLGDLQFLAI 966 //