hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-16575132/chunk_1/iprscan-20080811-16575132.nocrc
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Query sequence: ha00921
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00643.14.ls B-box zinc finger                               58.4    2.3e-14   1
PF00643.14.fs B-box zinc finger                               56.5    7.6e-14   1
PF00097.15.fs Zinc finger, C3HC4 type (RING finger)           30.5    2.5e-10   1
PF00097.15.ls Zinc finger, C3HC4 type (RING finger)           32.3    1.6e-06   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00097.15.fs   1/1      30    74 ..     1    50 []    30.5  2.5e-10
PF00097.15.ls   1/1      30    74 ..     1    50 []    32.3  1.6e-06
PF00643.14.fs   1/1     105   146 ..     1    50 []    56.5  7.6e-14
PF00643.14.ls   1/1     105   146 ..     1    50 []    58.4  2.3e-14

Alignments of top-scoring domains:
PF00097.15.fs: domain 1 of 1, from 30 to 74: score 30.5, E = 2.5e-10
                   *->CrICleelkepsndfplilpCgHsGslkyfCrsClerwlss.....s
                      C++Cl+ l ep+        CgHs     fC  C+++  + +++ ++
     ha00921    30    CPVCLDFLQEPV-----SVDCGHS-----FCLRCISEFCEKsdgaqG 66   

                   gnttCplC<-*
                   g   Cp+C   
     ha00921    67 GVYACPQC    74   

PF00097.15.ls: domain 1 of 1, from 30 to 74: score 32.3, E = 1.6e-06
                   *->CrICleelkepsndfplilpCgHsGslkyfCrsClerwlss.....s
                      C++Cl+ l ep+        CgHs     fC  C+++  + +++ ++
     ha00921    30    CPVCLDFLQEPV-----SVDCGHS-----FCLRCISEFCEKsdgaqG 66   

                   gnttCplC<-*
                   g   Cp+C   
     ha00921    67 GVYACPQC    74   

PF00643.14.fs: domain 1 of 1, from 105 to 146: score 56.5, E = 7.6e-14
                   *->ekervCpeHgdneklslFCedDgqlLCvvCrlsgeHqanklfrgHtv
                        +r+C +Hg  e ls FCe+D+++LC+vC+  +eH      r H++
     ha00921   105    PGARRCARHG--EDLSRFCEEDEAALCWVCDAGPEH------RTHRT 143  

                   vpl<-*
                   +pl   
     ha00921   144 APL    146  

PF00643.14.ls: domain 1 of 1, from 105 to 146: score 58.4, E = 2.3e-14
                   *->ekervCpeHgdneklslFCedDgqlLCvvCrlsgeHqanklfrgHtv
                        +r+C +Hg  e ls FCe+D+++LC+vC+  +eH      r H++
     ha00921   105    PGARRCARHG--EDLSRFCEEDEAALCWVCDAGPEH------RTHRT 143  

                   vpl<-*
                   +pl   
     ha00921   144 APL    146  

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