hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-16575132/chunk_1/iprscan-20080811-16575132.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: ha00921
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00336                                                  56.1    4.5e-12   1
SM00184                                                  41.8    9.3e-08   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00184    1/1      30    74 ..     1    23 []    41.8  9.3e-08
SM00336    1/1     105   146 ..     1    51 []    56.1  4.5e-12

Alignments of top-scoring domains:
SM00184: domain 1 of 1, from 30 to 74: score 41.8, E = 9.3e-08
                   *->CpICle....pvvlpCgH.FCr.Ci................CPlC<-
                      Cp+Cl+  ++pv  +CgH+FC +Ci++  +++++ +++   CP+C  
     ha00921    30    CPVCLDflqePVSVDCGHsFCLrCIsefceksdgaqggvyaCPQC   74   

                   *
                    
     ha00921     -   -    

SM00336: domain 1 of 1, from 105 to 146: score 56.1, E = 4.5e-12
                   *->eraplCeeHgdeepaeffCveedgallCrdCdeageHqanklfrgHr
                        a++C +Hg  e +  fC eed+a+lC++Cd  +eH      r Hr
     ha00921   105    PGARRCARHG--EDLSRFC-EEDEAALCWVCDAGPEH------RTHR 142  

                   vvll<-*
                   +++l   
     ha00921   143 TAPL    146  

//