hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/TIGRFAMs_HMM.LIB.bin Sequence file: /db/iprscan/tmp/20090618/iprscan-20090618-13512469/chunk_1/iprscan-20090618-13512469.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ha00950 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- TIGR01369 CPSaseII_lrg: carbamoyl-phosphate synth 2272.1 0 1 TIGR01368 CPSaseIIsmall: carbamoyl-phosphate synt 638.6 1.7e-189 1 TIGR00670 asp_carb_tr: aspartate carbamoyltransfe 399.8 1.3e-117 1 TIGR00857 pyrC_multi: dihydroorotase, multifuncti 275.1 4.6e-80 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- TIGR01368 1/1 36 393 .. 1 383 [] 638.6 1.7e-189 TIGR01369 1/1 422 1411 .. 1 1089 [] 2272.1 0 TIGR00857 1/1 1396 1768 .. 1 459 [] 275.1 4.6e-80 TIGR00670 1/1 1895 2194 .. 1 336 [] 399.8 1.3e-117 Alignments of top-scoring domains: TIGR01368: domain 1 of 1, from 36 to 393: score 638.6, E = 1.7e-189 *->AyLvLEDGTvfeGysFGaegtvaGEvVFNTgMTGYQEilTDPSYkGQ A LvLEDG+v++G FGa ++aGEvVF+TgM+GY+E+lTDPSYk Q ha00950 36 AALVLEDGSVLRGQPFGAAVSTAGEVVFQTGMVGYPEALTDPSYKAQ 82 IvvfTYPlIGNYGvNdeDarDElgL.KYFESkgkihvkGlVVrElsdryS I+v+TYPlIGNYG++++++ DE+gL K FES +ihv++lVV E + +S ha00950 83 ILVLTYPLIGNYGIPPDEM-DEFGLcKWFESS-GIHVAALVVGECCPTPS 130 nwrateSLdqfLkehgipgIyGvDTRaLVkkIRekGtmkgvIstedsnde +w at++L ++L++hgipg++GvDTR+L+kk+Re+G+++g+++ + ++ ha00950 131 HWSATRTLHEWLQQHGIPGLQGVDTRELTKKLREQGSLLGKLVQNGTEP- 179 elvekakfesPdidgiNLVaeVStkepytwgqgtwnlwkffvakrngkkp ++ f +P+++ LV eVS k+p ++ +g + ha00950 180 SSLP---FLDPNAR--PLVPEVSIKTPRVFNT-------------GGAP- 210 lrVvviDfGvKqNIlRrLvkrGcevtVVPydtdaeeIkkynPDGIFLSNG r++++D+G K+N++R+L +rG+evtVVP+d+ ++ +++ G+FLSNG ha00950 211 -RILALDCGLKYNQIRCLCQRGAEVTVVPWDHALD--SQEY-EGLFLSNG 256 PGDPHaavepaietvrellea..kiPiFGICLGHQlLALAfGAkTyKLKF PGDP a+++ ++ t+ ++l+ ++ P+FGICLGHQlLALA GAkTyK+++ ha00950 257 PGDP-ASYPSVVSTLSRVLSEpnPRPVFGICLGHQLLALAIGAKTYKMRY 305 GHRGgNhPVkdlrtGrveITSQNHGYAVDeeSllagdlevTHvNLNDgtv G+RG+N+P+ + +Gr++ TSQNHG+AV +Sl+a+ + ++++N NDg++ ha00950 306 GNRGHNQPCLLVGSGRCFLTSQNHGFAVETDSLPAD-WAPLFTNANDGSN 354 EGirhkdlPvFSVQYHPEAsPGPhDteyLFdeFidlikk<-* EGi h +lP+FSVQ+HPE GP D e LFd F++ +k+ ha00950 355 EGIVHNSLPFFSVQFHPEHQAGPSDMELLFDIFLETVKE 393 TIGR01369: domain 1 of 1, from 422 to 1411: score 2272.1, E = 0 *->PkrtdIkkvLVIGSGPIvIGQAAEFDYSGsQAcKALKEEGyeViLVN + ++++kvL++GSG+++IGQA+EFDYSGsQA+KALKEE++++ L+N ha00950 422 SGLPPPRKVLILGSGGLSIGQAGEFDYSGSQAIKALKEENIQTLLIN 468 SNPATiMTDpemADkvYiePlTpEaVekIIEKERPDgILptlGGQTALNl +N+AT++T++++ADkvY++P+Tp++V+++I++ERPDg+L+t+GGQTALN+ ha00950 469 PNIATVQTSQGLADKVYFLPITPHYVTQVIRNERPDGVLLTFGGQTALNC 518 AVeLeesGVLekYGVevLGTpveaIkkaEDRElFreaMkeIgepVPkSei +VeL+++GVL++YGV+vLGTpve+I+++EDR++F+++M eIge+V++Se+ ha00950 519 GVELTKAGVLARYGVRVLGTPVETIELTEDRRAFAARMAEIGEHVAPSEA 568 vhsveEAlkaAkeiGyPVIVRpAFTLGGtGGGIAsNeEELkeiveraLsa ++s+e+A++aA+++GyPV VR+AF+LGG+G+G+AsN+EEL+++v++a+++ ha00950 569 ANSLEQAQAAAERLGYPVLVRAAFALGGLGSGFASNREELSALVAPAFAH 618 SPInQvLvEkSlaGWKEiEYEVmRDskDNCItVCNMENfDPmGVHTGDSI + +QvLv+kSl+GWKEiEYEV+RD+++NC+t ha00950 619 T--SQVLVDKSLKGWKEIEYEVVRDAYGNCVT------------------ 648 VVAPSQTLtDkEYQmLRdasikIIReLGivGGGCNvQFALdPdsgrYyVI Yy+I ha00950 649 ----------------------------------------------YYII 652 EVNPRvSRSSALASKATGYPIAkvAAKLAvGYgLdELkNpvTktTpAsFE EVN+R+SRSSALASKATGYP+A+vAAKLA+G++L+EL+N+vT+ T A+FE ha00950 653 EVNARLSRSSALASKATGYPLAYVAAKLALGIPLPELRNSVTGGT-AAFE 701 PSLDYVVVKIPRWdFdKFegVdrkLGTqMKSVGEVMAIGRtFEEALQKAl PS+DY+VVKIPRWd++KF +V++k+G++MKSVGEVM+IGR+FEEA+QKAl ha00950 702 PSVDYCVVKIPRWDLSKFLRVSTKIGSCMKSVGEVMGIGRSFEEAFQKAL 751 RSLEigllGfefdlpdkevesdedleealkkPtDrRPYWiFaIaeALrrG R+++++++G fd++ v++++d ++l++PtD+R iF++a AL++G ha00950 752 RMVDENCVG--FDHT---VKPVSD--MELETPTDKR---IFVVAAALWAG 791 vsVeeihElTkIDrWFLhkiknIVelekeleelkNkltgIeeldkelLrk +sV++++ElT+IDrWFLh++k+I+ +++ le++ +++ +l+++lL++ ha00950 792 YSVDRLYELTRIDRWFLHRMKRIIAHAQLLEQH--RGQ---PLPPDLLQQ 836 aKklGFSDaqIArlvnvteaesieeleVRklRkelgiiPvyKrVDTCAAE aK+lGFSD+qIA +v+ te+ VRklR+elgi+P++K++DT+AAE ha00950 837 AKCLGFSDKQIALAVLSTELA------VRKLRQELGICPAVKQIDTVAAE 880 FeAkTpYlYSTYegerddveftekeKkkvlvLGSGPnRIGQGVEFDYCcV ++A+T+YlY+TY+g+++d++f+++ +vlvLGSG++RIG++VEFD+C+V ha00950 881 WPAQTNYLYLTYWGTTHDLTFRTP---HVLVLGSGVYRIGSSVEFDWCAV 927 havlaLreaGyetIMiNyNPETVSTDYDtsDRLYFEPltfEdVmnIielE ++++Lr++Gy+tIM+NyNPETVSTDYD++DRLYF++++fE Vm+I+elE ha00950 928 GCIQQLRKMGYKTIMVNYNPETVSTDYDMCDRLYFDEISFEVVMDIYELE 977 kpeGVIVqfGGQTplNlAkeLeeaGGvpILGTSpesIDrAEDReKFselL +peGVI ++GGQ+p+N+A++L++++ +++LGTSpe+ID+AE+R+KFs+lL ha00950 978 NPEGVILSMGGQLPNNMAMALHRQQ-CRVLGTSPEAIDSAENRFKFSRLL 1026 deLGipQPewkiAtSvEeAkefAseiGYPvLVRPSYVLGGrAMeIvyneE d++Gi+QP+w++++++E+A++f++++GYP++VRPSYVL+G+AM+++y + ha00950 1027 DTIGISQPQWRELSDLESARQFCQTVGYPCVVRPSYVLSGAAMNVAYTDG 1076 eLarYleeAvevSpehPVLiDKyledAvEidVDavsDGeeVlIpGImEHI +L+r+l++A++vS+ehPV+i+K++++A+EidVDav+ ++ V++++I+EH+ ha00950 1077 DLERFLSSAAAVSKEHPVVISKFIQEAKEIDVDAVASDGVVAAIAISEHV 1126 EeAGVHSGDStcvlPpqtLsedivkrikdivrkiAkeLnvkGLfNiQFvv E+AGVHSGD+t+v+Ppq++++++++rik+iv+++++eL+v+G+fN+Q ++ ha00950 1127 ENAGVHSGDATLVTPPQDITAKTLERIKAIVHAVGQELQVTGPFNLQLIA 1176 kdEgevYVIEvNpRASRTVPFvSKatGiplaklAvrvmlGkkleelgkdl kd ++++VIE+N+R+SR++PFvSK++G++l+ lA+rv++G+++e++g ha00950 1177 KD-DQLKVIECNVRVSRSFPFVSKTLGVDLVALATRVIMGEEVEPVG--- 1222 GvgkekeskyvaVKvpvFSFsKLagvDpvLGPEMKSTGEvmgigrDleeA ++++s +v+VKvp+FSFs+Lag+D+vLG+EM+STGEv+g+g++++eA ha00950 1223 ---LMTGSGVVGVKVPQFSFSRLAGADVVLGVEMTSTGEVAGFGESRCEA 1269 flKAmlssgnripkKGsvllsvrdkdKeelldlakkLaekGykiyateGT +lKAmls+g++ipkK+++l+++++k+K+ell++++ L+++Gy++ya++GT ha00950 1270 YLKAMLSTGFKIPKKNILLTIGSYKNKSELLPTVRLLESLGYSLYASLGT 1319 akfLeeaGIkaevvlkvsegredddCeaqPnilelikngeielvINltsk a+f++e+G+k+++v++++e+++d++C++q++ile+++++++elvINl+++ ha00950 1320 ADFYTEHGVKVTAVDWHFEEAVDGECPPQRSILEQLAEKNFELVINLSMR 1369 gkegvllretatdGYkiRReAvdygVPlittletaeafleAl<-* g++g++l++++t+GY++RR+A+d++VPli++++++++f+eAl ha00950 1370 GAGGRRLSSFVTKGYRTRRLAADFSVPLIIDIKCTKLFVEAL 1411 TIGR00857: domain 1 of 1, from 1396 to 1768: score 275.1, E = 4.6e-80 *->gkevevdil...VesGvDdgkIkkIgddklrikadaevidakGllvl +++ +++ Ve + +Ig+ ++k+ + l+ l ha00950 1396 PLIIDIKCTklfVE------ALGQIGP-APPLKVHVDCMTSQKLVRL 1435 PGlIDlHVHLRdpGeeyKEDiesGskAAihGGfTtVadMPNTkPPidtpe PGlID+HVHLR+pG++ KED++sG++AA++GG+T V +MPNT+PPi ++ ha00950 1436 PGLIDVHVHLREPGGTHKEDFASGTAAALAGGITMVCAMPNTRPPIIDAP 1485 tlerklqrlkkksGVNAHHqPPGDPqAENRPDSAlVdvllyagvTkgnkg +l + +++++ +d++l +g + n+g ha00950 1486 ALALAQKLAEAGA---------------------RCDFALFLGASSENAG 1514 keivrlteayelkeagavGevFiddgsevldilsmrkaLeyAaelGvliv +++ a+G ++ l+++ + ha00950 1515 TL--------GTVAGSAAG---------LKLYLNETFS------------ 1535 lHaEdpdliagglveyegrsaaalGLkaRPpeAEevaVarlleLakhagc +l+ + v + + + +++ +AE Va +l a+ + + ha00950 1536 ------ELRLDSVVQWMEHFETWPSHLPIVAHAEQQTVAAVLMVAQLTQR 1579 pnKKPHvHicHISTkeslelikkaKkqlkGikiTaEVTPHHLLLseedva vHicH+ ke lik aK + G+ +T+EV PHHL+Ls +d++ ha00950 1580 S-----VHICHVARKEEILLIKAAKAR--GLPVTCEVAPHHLFLSHDDLE 1622 rGLPPHtPpld.tnlKvNPPLReeeDRlaLieglkdGiIDiIAsDHAPHt r l+++ + v P L+++ D++aL+e+ + +ID++AsDHAPHt ha00950 1623 R--------LGpGKGEVRPELGSRQDVEALWENMA--VIDCFASDHAPHT 1662 lEEKlkevaaAppGipGLEtvlplllqllvkgnlislkdlvrmlSiNPAr lEEK+ ppG+pGLEt+lplll+++++g ++sl dl+ l NP+r ha00950 1663 LEEKCG--SRPPPGFPGLETMLPLLLTAVSEG-RLSLDDLLQRLHHNPRR 1709 IfGlpdkGtleeGnpAdltV.iDLkkewtikaetfySKAknTPfeGmslk If lp + e+ V++DL+ ewti + SKA++TPfeG ++k ha00950 1710 IFHLPPQ---EDT-----YVeVDLEHEWTIPSHMPFSKAHWTPFEGQKVK 1751 GkpiaTilrGkvvyedg<-* G++ ++lrG+v+y dg ha00950 1752 GTVRRVVLRGEVAYIDG 1768 TIGR00670: domain 1 of 1, from 1895 to 2194: score 399.8, E = 1.3e-117 *->rHlisisDLsrEEiellLetAeeleqvasgekklkeaLkGKivanYI H++s ++++ l+ A +l + e++l+ +LkGK+ a+ ha00950 1895 QHILSVQQFTKDQMSHLFNVAHTLRMMVQKERSLD-ILKGKVMAS-- 1938 lFFEPSTRTRlSFEtAmKRLGGPNdVvnfsdsetSSvaKGEtLaDTiktl +F+E STRT +SF Am RLGG V+ fs+ +tSSv+KGE+LaD t ha00950 1939 MFYEVSTRTSSSFAAAMARLGG--AVLSFSE-ATSSVQKGESLADSVQTM 1985 saYgDsDaIVIRHpleGVCeGaarlaaEvsdRlgieVPSVINAGDGsgqH s Y +D+ V+RHp+ Ga +laa P VINAGDG+g+H ha00950 1986 SCY--ADVVVLRHPQ----PGAVELAAKHC-----RRP-VINAGDGVGEH 2023 PTQtLLDLYTiyeefGPDNPalerldGlkiAlvGDLKyGRtvhSlikaLa PTQ+LLD +Ti ee G ++ G +i +vGDLK+GRtvhSl+ +L+ ha00950 2024 PTQALLDIFTIREELG-------TVNGMTITMVGDLKHGRTVHSLACLLT 2066 lfgnaevyLisPeeLrmPkeiledlkakGvkvretesLeEvideaDVLKI + +++ ++P+ LrmP + + +G k e+es+eE++ + DVL ha00950 2067 QYR-VSLRYVAPPSLRMPPTVRAFVASRGTKQEEFESIEEALPDTDVL-- 2113 WYvTRiQKERfpeddpeeyekvrgsYgitaerLeaakkgkEvivlHPLPV Y+TRiQKERf+ + +eye g++ +t + +akk + v+HP P ha00950 2114 -YMTRIQKERFG--STQEYEACFGQFILTPHIMTRAKKK--MVVMHPMP- 2157 hRvdEIdpeVddtphakyFkdQafnGVpVRMALLslllg<-* Rv EI+ eVd++p+a+yF+ Qa nG +RMALL+ +lg ha00950 2158 -RVNEISVEVDSDPRAAYFR-QAENGMYIRMALLATVLG 2194 //