hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090525/iprscan-20090525-15521326/chunk_1/iprscan-20090525-15521326.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ha01230 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00096.16.ls Zinc finger, C2H2 type 289.7 5.2e-84 9 PF00096.16.fs Zinc finger, C2H2 type 272.0 1.1e-78 9 PF01352.17.fs KRAB box 106.4 1.2e-29 1 PF01352.17.ls KRAB box 108.4 1.9e-29 1 PF01096.9.fs Transcription factor S-II (TFIIS) 34.6 5.2e-10 8 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01352.17.fs 1/1 84 124 .. 1 41 [] 106.4 1.2e-29 PF01352.17.ls 1/1 84 124 .. 1 41 [] 108.4 1.9e-29 PF00096.16.ls 1/9 193 215 .. 1 24 [] 28.2 2.7e-05 PF00096.16.fs 1/9 193 215 .. 1 24 [] 26.3 2.7e-05 PF00096.16.ls 2/9 221 243 .. 1 24 [] 30.4 6e-06 PF00096.16.fs 2/9 221 243 .. 1 24 [] 28.4 7.9e-06 PF00096.16.ls 3/9 249 271 .. 1 24 [] 38.0 3e-08 PF00096.16.fs 3/9 249 271 .. 1 24 [] 36.0 1e-07 PF00096.16.ls 4/9 277 299 .. 1 24 [] 22.3 0.0016 PF00096.16.ls 5/9 305 327 .. 1 24 [] 29.0 1.5e-05 PF00096.16.fs 5/9 305 327 .. 1 24 [] 27.1 1.7e-05 PF00096.16.ls 6/9 333 355 .. 1 24 [] 36.5 8.3e-08 PF00096.16.fs 6/9 333 355 .. 1 24 [] 34.6 2.3e-07 PF00096.16.ls 7/9 361 383 .. 1 24 [] 34.7 3.1e-07 PF00096.16.fs 7/9 361 383 .. 1 24 [] 32.7 6.8e-07 PF00096.16.fs 8/9 389 411 .. 1 24 [] 34.1 3e-07 PF00096.16.ls 8/9 389 411 .. 1 24 [] 36.1 1.2e-07 PF00096.16.fs 9/9 417 439 .. 1 24 [] 32.5 7.5e-07 PF00096.16.ls 9/9 417 439 .. 1 24 [] 34.5 3.4e-07 Alignments of top-scoring domains: PF01352.17.fs: domain 1 of 1, from 84 to 124: score 106.4, E = 1.2e-29 *->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-* VtFeDVaV+FtqEEW+lLdpaQr+LYrdVMlEN++nL+Slg ha01230 84 VTFEDVAVEFTQEEWALLDPAQRTLYRDVMLENCRNLASLG 124 PF01352.17.ls: domain 1 of 1, from 84 to 124: score 108.4, E = 1.9e-29 *->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-* VtFeDVaV+FtqEEW+lLdpaQr+LYrdVMlEN++nL+Slg ha01230 84 VTFEDVAVEFTQEEWALLDPAQRTLYRDVMLENCRNLASLG 124 PF00096.16.ls: domain 1 of 9, from 193 to 215: score 28.2, E = 2.7e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* +C+ +C k+Fs+ksnL++H+r+H ha01230 193 NECN-QCFKVFSTKSNLTQHKRIH 215 PF00096.16.fs: domain 1 of 9, from 193 to 215: score 26.3, E = 2.7e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* +C+ +C k+Fs+ksnL++H+r+H ha01230 193 NECN-QCFKVFSTKSNLTQHKRIH 215 PF00096.16.ls: domain 2 of 9, from 221 to 243: score 30.4, E = 6e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +CgksFs +s L+ H+r+H ha01230 221 YDCS-QCGKSFSIRSYLTIHKRIH 243 PF00096.16.fs: domain 2 of 9, from 221 to 243: score 28.4, E = 7.9e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +CgksFs +s L+ H+r+H ha01230 221 YDCS-QCGKSFSIRSYLTIHKRIH 243 PF00096.16.ls: domain 3 of 9, from 249 to 271: score 38.0, E = 3e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+Fs++s+L+ Hlr+H ha01230 249 YECN-HCGKAFSDPSSLRLHLRIH 271 PF00096.16.fs: domain 3 of 9, from 249 to 271: score 36.0, E = 1e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+Fs++s+L+ Hlr+H ha01230 249 YECN-HCGKAFSDPSSLRLHLRIH 271 PF00096.16.ls: domain 4 of 9, from 277 to 299: score 22.3, E = 0.0016 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +C +F+++ nLk+H+r+H ha01230 277 YECN-QCFHVFRTSCNLKSHKRIH 299 PF00096.16.ls: domain 5 of 9, from 305 to 327: score 29.0, E = 1.5e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cgk+Fs++s+L+ H +H ha01230 305 HECN-QCGKAFSTRSSLTGHNSIH 327 PF00096.16.fs: domain 5 of 9, from 305 to 327: score 27.1, E = 1.7e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cgk+Fs++s+L+ H +H ha01230 305 HECN-QCGKAFSTRSSLTGHNSIH 327 PF00096.16.ls: domain 6 of 9, from 333 to 355: score 36.5, E = 8.3e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ dCgk+F+ +s L++H rtH ha01230 333 YECH-DCGKTFRKSSYLTQHVRTH 355 PF00096.16.fs: domain 6 of 9, from 333 to 355: score 34.6, E = 2.3e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ dCgk+F+ +s L++H rtH ha01230 333 YECH-DCGKTFRKSSYLTQHVRTH 355 PF00096.16.ls: domain 7 of 9, from 361 to 383: score 34.7, E = 3.1e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +CgksFs++ +L+ H+r+H ha01230 361 YECN-ECGKSFSSSFSLTVHKRIH 383 PF00096.16.fs: domain 7 of 9, from 361 to 383: score 32.7, E = 6.8e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +CgksFs++ +L+ H+r+H ha01230 361 YECN-ECGKSFSSSFSLTVHKRIH 383 PF00096.16.fs: domain 8 of 9, from 389 to 411: score 34.1, E = 3e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ dCgk+F++ s k+HlrtH ha01230 389 YECS-DCGKAFNNLSAVKKHLRTH 411 PF00096.16.ls: domain 8 of 9, from 389 to 411: score 36.1, E = 1.2e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ dCgk+F++ s k+HlrtH ha01230 389 YECS-DCGKAFNNLSAVKKHLRTH 411 PF00096.16.fs: domain 9 of 9, from 417 to 439: score 32.5, E = 7.5e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +CgksF+++s L H+r+H ha01230 417 YECN-HCGKSFTSNSYLSVHKRIH 439 PF00096.16.ls: domain 9 of 9, from 417 to 439: score 34.5, E = 3.4e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +CgksF+++s L H+r+H ha01230 417 YECN-HCGKSFTSNSYLSVHKRIH 439 //