hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090525/iprscan-20090525-15521326/chunk_1/iprscan-20090525-15521326.nocrc
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Query sequence: ha01230
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00355                                                 247.9    8.3e-70   9
SM00349                                                 135.7      5e-36   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00349      1/1      84   144 ..     1    62 []   135.7    5e-36
SM00355      1/9     193   215 ..     1    23 []    24.3    0.017
SM00355      2/9     221   243 ..     1    23 []    26.0   0.0053
SM00355      3/9     249   271 ..     1    23 []    33.1  3.8e-05
SM00355      4/9     277   299 ..     1    23 []    20.4     0.26
SM00355      5/9     305   327 ..     1    23 []    25.6    0.007
SM00355      6/9     333   355 ..     1    23 []    28.1   0.0012
SM00355      7/9     361   383 ..     1    23 []    31.1  0.00016
SM00355      8/9     389   411 ..     1    23 []    30.4  0.00024
SM00355      9/9     417   439 ..     1    23 []    29.0  0.00064

Alignments of top-scoring domains:
SM00349: domain 1 of 1, from 84 to 144: score 135.7, E = 5e-36
                   *->VtFeDVAVdFsqEEWeqLDpaQrnLYRdVMlENYsnLvSLGgfqvsk
                      VtFeDVAV+F+qEEW +LDpaQr+LYRdVMlEN++nL+SLG + v k
     ha01230    84    VTFEDVAVEFTQEEWALLDPAQRTLYRDVMLENCRNLASLG-CRVNK 129  

                   pdliskLEqgeEpwi<-*
                   p lis+LEq ++  +   
     ha01230   130 PSLISQLEQDKKVVT    144  

SM00355: domain 1 of 9, from 193 to 215: score 24.3, E = 0.017
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                       +C++ C k+fs+k++L++H r+H   
     ha01230   193    NECNQ-CFKVFSTKsNLTQHKRIH    215  

SM00355: domain 2 of 9, from 221 to 243: score 26.0, E = 0.0053
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y C++ Cgksfs ++ L+ H r+H   
     ha01230   221    YDCSQ-CGKSFSIRsYLTIHKRIH    243  

SM00355: domain 3 of 9, from 249 to 271: score 33.1, E = 3.8e-05
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk fs++++L+ H+r+H   
     ha01230   249    YECNH-CGKAFSDPsSLRLHLRIH    271  

SM00355: domain 4 of 9, from 277 to 299: score 20.4, E = 0.26
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ C  +f++  +Lk H r+H   
     ha01230   277    YECNQ-CFHVFRTScNLKSHKRIH    299  

SM00355: domain 5 of 9, from 305 to 327: score 25.6, E = 0.007
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C++ Cgk fs++++L+ H  +H   
     ha01230   305    HECNQ-CGKAFSTRsSLTGHNSIH    327  

SM00355: domain 6 of 9, from 333 to 355: score 28.1, E = 0.0012
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C+  Cgk+f+  + L++H+r+H   
     ha01230   333    YECHD-CGKTFRKSsYLTQHVRTH    355  

SM00355: domain 7 of 9, from 361 to 383: score 31.1, E = 0.00016
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgksfss  +L+ H r+H   
     ha01230   361    YECNE-CGKSFSSSfSLTVHKRIH    383  

SM00355: domain 8 of 9, from 389 to 411: score 30.4, E = 0.00024
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C+  Cgk f++ +a k+H+r+H   
     ha01230   389    YECSD-CGKAFNNLsAVKKHLRTH    411  

SM00355: domain 9 of 9, from 417 to 439: score 29.0, E = 0.00064
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgksf+s + L  H r+H   
     ha01230   417    YECNH-CGKSFTSNsYLSVHKRIH    439  

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