hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-18104068/chunk_1/iprscan-20080811-18104068.nocrc
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Query sequence: ha01636
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00134.13.ls Cyclin, N-terminal domain                      172.0    1.4e-48   1
PF00134.13.fs Cyclin, N-terminal domain                      170.2    2.6e-48   1
PF02984.9.fs Cyclin, C-terminal domain                       74.1    1.2e-20   1
PF02984.9.ls Cyclin, C-terminal domain                       76.0    1.1e-19   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00134.13.fs   1/1      50   177 ..     1   146 []   170.2  2.6e-48
PF00134.13.ls   1/1      50   177 ..     1   146 []   172.0  1.4e-48
PF02984.9.fs   1/1     179   308 ..     1   136 []    74.1  1.2e-20
PF02984.9.ls   1/1     179   308 ..     1   136 []    76.0  1.1e-19

Alignments of top-scoring domains:
PF00134.13.fs: domain 1 of 1, from 50 to 177: score 170.2, E = 2.6e-48
                   *->diyaylrelEeeylplpppdyldqqpqpdsidinpkMRaiLvDWLve
                      ++++ l++lEe+y+p+ +++ + q +      i p+MR++L++W+ e
     ha01636    50    RVLQSLLRLEERYVPRASYFQCVQRE------IKPHMRKMLAYWMLE 90   

                   VhekfkLlpeTLyLavnylDRFLskkpvpklkvprkklQLvGvtaLliAs
                   V+e+ ++  e+++La+nylDR+Ls++ +    + + +lQL+G++++l+As
     ha01636    91 VCEEQRCEEEVFPLAMNYLDRYLSCV-P----TRKAQLQLLGAVCMLLAS 135  

                   KyEEiksdvypPevedfvyitasDnqaytkkeilrMEkliLktLkfdls<
                   K++E+     p ++e ++ +t  D+ a ++++++++E l+L++Lk+dl+ 
     ha01636   136 KLRET----TPLTIEKLCIYT--DH-AVSPRQLRDWEVLVLGKLKWDLA  177  

                   -*
                     
     ha01636     -    -    

PF00134.13.ls: domain 1 of 1, from 50 to 177: score 172.0, E = 1.4e-48
                   *->diyaylrelEeeylplpppdyldqqpqpdsidinpkMRaiLvDWLve
                      ++++ l++lEe+y+p+ +++ + q +      i p+MR++L++W+ e
     ha01636    50    RVLQSLLRLEERYVPRASYFQCVQRE------IKPHMRKMLAYWMLE 90   

                   VhekfkLlpeTLyLavnylDRFLskkpvpklkvprkklQLvGvtaLliAs
                   V+e+ ++  e+++La+nylDR+Ls++ +    + + +lQL+G++++l+As
     ha01636    91 VCEEQRCEEEVFPLAMNYLDRYLSCV-P----TRKAQLQLLGAVCMLLAS 135  

                   KyEEiksdvypPevedfvyitasDnqaytkkeilrMEkliLktLkfdls<
                   K++E+     p ++e ++ +t  D+ a ++++++++E l+L++Lk+dl+ 
     ha01636   136 KLRET----TPLTIEKLCIYT--DH-AVSPRQLRDWEVLVLGKLKWDLA  177  

                   -*
                     
     ha01636     -    -    

PF02984.9.fs: domain 1 of 1, from 179 to 308: score 74.1, E = 1.2e-20
                   *->PTPysFLrrflkaaqlkdksPvdqeeltlakyLlELslldydfflky
                      +  ++FL ++l +++l  +   +++++++a+++l L+ +dy f ++y
     ha01636   179    VIAHDFLAFILHRLSLPRD--RQALVKKHAQTFLALCATDYTF-AMY 222  

                   pPSmiAAaAvylArctLnksssGnnppWtetLehytglqYseedlkeCvk
                   pPSmiA++++ +A + L+ +     +   + L+  + ++      ++C++
     ha01636   223 PPSMIATGSIGAAVQGLGAC-----SMSGDELTELLAGI--TGTEVDCLR 265  

                   llvelhlna.....pesklkavreKYssskfgkvssltppsssl<-*
                   +++e++++a +++ +e+ +++   +  +  +g+ s+ ++++s++   
     ha01636   266 ACQEQIEAAlreslREAAQTSSS-PAPKAPRGSSSQGPSQTSTP    308  

PF02984.9.ls: domain 1 of 1, from 179 to 308: score 76.0, E = 1.1e-19
                   *->PTPysFLrrflkaaqlkdksPvdqeeltlakyLlELslldydfflky
                      +  ++FL ++l +++l  +   +++++++a+++l L+ +dy f ++y
     ha01636   179    VIAHDFLAFILHRLSLPRD--RQALVKKHAQTFLALCATDYTF-AMY 222  

                   pPSmiAAaAvylArctLnksssGnnppWtetLehytglqYseedlkeCvk
                   pPSmiA++++ +A + L+ +     +   + L+  + ++      ++C++
     ha01636   223 PPSMIATGSIGAAVQGLGAC-----SMSGDELTELLAGI--TGTEVDCLR 265  

                   llvelhlna.....pesklkavreKYssskfgkvssltppsssl<-*
                   +++e++++a +++ +e+ +++   +  +  +g+ s+ ++++s++   
     ha01636   266 ACQEQIEAAlreslREAAQTSSS-PAPKAPRGSSSQGPSQTSTP    308  

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