# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Oha01834.fasta.nr -Q ha01834.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ha01834, 140 aa vs /cdna2/lib/nr/nr library 2779448989 residues in 8089198 sequences statistics sampled from 60000 to 8087618 sequences Expectation_n fit: rho(ln(x))= 4.7876+/-0.000179; mu= 8.1712+/- 0.010 mean_var=62.5200+/-12.139, 0's: 38 Z-trim: 53 B-trim: 0 in 0/65 Lambda= 0.162205 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(8089198) gi|46577102|sp|Q90YU5.2|RL23_ICTPU RecName: Full=6 ( 140) 915 221.8 2.8e-56 gi|149599503|ref|XP_001509789.1| PREDICTED: hypoth ( 193) 915 221.9 3.6e-56 gi|51316654|sp|Q6PC14.1|RL23_DANRE RecName: Full=6 ( 140) 911 220.8 5.3e-56 gi|49257378|gb|AAH73541.1| MGC82808 protein [Xenop ( 140) 910 220.6 6.2e-56 gi|12849613|dbj|BAB28415.1| unnamed protein produc ( 140) 910 220.6 6.2e-56 gi|62900930|sp|Q5REU2.1|RL23_PONAB RecName: Full=6 ( 140) 909 220.4 7.3e-56 gi|223646576|gb|ACN10046.1| 60S ribosomal protein ( 140) 905 219.4 1.4e-55 gi|74267764|gb|AAI02557.1| Ribosomal protein L23 [ ( 140) 905 219.4 1.4e-55 gi|38571606|gb|AAH62716.1| Ribosomal protein L23 [ ( 140) 905 219.4 1.4e-55 gi|12832665|dbj|BAB22203.1| unnamed protein produc ( 140) 904 219.2 1.6e-55 gi|10121725|gb|AAG13342.1|AF266222_1 ribosomal pro ( 140) 903 219.0 1.9e-55 gi|157929900|gb|ABW04138.1| ribosomal protein L23 ( 141) 903 219.0 2e-55 gi|4583511|gb|AAD25102.1| ribosomal protein L17 [D ( 140) 900 218.3 3.2e-55 gi|224086322|ref|XP_002192767.1| PREDICTED: hypoth ( 189) 901 218.6 3.4e-55 gi|62901063|sp|Q9XSU3.1|RL23_CANFA RecName: Full=6 ( 140) 894 216.9 8.4e-55 gi|118102967|ref|XP_418122.2| PREDICTED: similar t ( 140) 892 216.4 1.2e-54 gi|114667765|ref|XP_001172684.1| PREDICTED: simila ( 140) 889 215.7 1.9e-54 gi|209730938|gb|ACI66338.1| 60S ribosomal protein ( 140) 887 215.2 2.6e-54 gi|30144650|gb|AAP14949.1| ribosomal protein L23 [ ( 140) 886 215.0 3.1e-54 gi|114667763|ref|XP_001172698.1| PREDICTED: hypoth ( 144) 882 214.1 6e-54 gi|13097600|gb|AAH03518.1|AAH03518 Similar to ribo ( 134) 875 212.4 1.8e-53 gi|86355131|dbj|BAE78800.1| ribosomal protein L23 ( 136) 872 211.7 2.9e-53 gi|37779090|gb|AAP20205.1| ribosomal protein L17 [ ( 143) 870 211.2 4.2e-53 gi|62083503|gb|AAX62476.1| ribosomal protein L23 [ ( 140) 856 208.0 4e-52 gi|67084029|gb|AAY66949.1| 60S ribosomal protein L ( 140) 856 208.0 4e-52 gi|29839631|sp|Q9GNE2.1|RL23_AEDAE RecName: Full=6 ( 140) 856 208.0 4e-52 gi|15081322|gb|AAK83857.1|AF395586_1 ribosomal pro ( 140) 853 207.3 6.5e-52 gi|212515267|gb|EEB17438.1| 60S ribosomal protein ( 140) 851 206.8 8.9e-52 gi|157361531|gb|ABV44723.1| 60S ribosomal protein ( 140) 850 206.6 1.1e-51 gi|91085777|ref|XP_974360.1| PREDICTED: similar to ( 140) 848 206.1 1.5e-51 gi|193700054|ref|XP_001949865.1| PREDICTED: simila ( 140) 847 205.9 1.7e-51 gi|121543837|gb|ABM55583.1| putative 60S ribosomal ( 140) 845 205.4 2.4e-51 gi|70909731|emb|CAJ17291.1| ribosomal protein L23e ( 140) 842 204.7 3.8e-51 gi|188572437|gb|ACD65125.1| putative 60S ribosomal ( 140) 841 204.4 4.5e-51 gi|56405342|sp|P48159.2|RL23_DROME RecName: Full=6 ( 140) 839 204.0 6.3e-51 gi|161671298|gb|ABX75501.1| ribosomal protein l23 ( 140) 837 203.5 8.7e-51 gi|110671520|gb|ABG82011.1| putative ribosomal pro ( 140) 835 203.0 1.2e-50 gi|157816849|gb|ABV82416.1| TA01212p [Drosophila m ( 140) 835 203.0 1.2e-50 gi|190587615|gb|EDV27657.1| conserved hypothetical ( 136) 834 202.8 1.4e-50 gi|197260806|gb|ACH56903.1| 60S ribosomal protein ( 140) 834 202.8 1.4e-50 gi|158591930|gb|EDP30533.1| 60S ribosomal protein ( 140) 832 202.3 1.9e-50 gi|66270163|gb|AAY43411.1| ribosomal protein L23 [ ( 141) 826 200.9 5.2e-50 gi|149269218|ref|XP_001472784.1| PREDICTED: simila ( 134) 825 200.7 5.9e-50 gi|188572534|gb|ACD65173.1| putative 60S ribosomal ( 140) 825 200.7 6.1e-50 gi|22758906|gb|AAN05612.1| ribosomal protein L17A ( 140) 825 200.7 6.1e-50 gi|158187776|gb|ABW23177.1| ribosomal protein rpl2 ( 140) 824 200.5 7.1e-50 gi|162668097|gb|EDQ54712.1| predicted protein [Phy ( 140) 824 200.5 7.1e-50 gi|70909727|emb|CAJ17289.1| ribosomal protein L23e ( 140) 823 200.2 8.4e-50 gi|162685108|gb|EDQ71505.1| predicted protein [Phy ( 140) 820 199.5 1.4e-49 gi|166952303|gb|ABZ04234.1| ribosomal protein rpl2 ( 140) 819 199.3 1.6e-49 >>gi|46577102|sp|Q90YU5.2|RL23_ICTPU RecName: Full=60S r (140 aa) initn: 915 init1: 915 opt: 915 Z-score: 1167.0 bits: 221.8 E(): 2.8e-56 Smith-Waterman score: 915; 100.000% identity (100.000% similar) in 140 aa overlap (1-140:1-140) 10 20 30 40 50 60 ha0183 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|465 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDM 10 20 30 40 50 60 70 80 90 100 110 120 ha0183 VMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|465 VMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGP 70 80 90 100 110 120 130 140 ha0183 VAKECADLWPRIASNAGSIA :::::::::::::::::::: gi|465 VAKECADLWPRIASNAGSIA 130 140 >>gi|149599503|ref|XP_001509789.1| PREDICTED: hypothetic (193 aa) initn: 915 init1: 915 opt: 915 Z-score: 1165.0 bits: 221.9 E(): 3.6e-56 Smith-Waterman score: 915; 100.000% identity (100.000% similar) in 140 aa overlap (1-140:54-193) 10 20 30 ha0183 MSKRGRGGSSGAKFRISLGLPVGAVINCAD :::::::::::::::::::::::::::::: gi|149 AVRHVESERVEAISRQPLRPPPPSLFGAAKMSKRGRGGSSGAKFRISLGLPVGAVINCAD 30 40 50 60 70 80 40 50 60 70 80 90 ha0183 NTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 NTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRR 90 100 110 120 130 140 100 110 120 130 140 ha0183 KDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSIA :::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 KDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSIA 150 160 170 180 190 >>gi|51316654|sp|Q6PC14.1|RL23_DANRE RecName: Full=60S r (140 aa) initn: 911 init1: 911 opt: 911 Z-score: 1161.9 bits: 220.8 E(): 5.3e-56 Smith-Waterman score: 911; 99.286% identity (100.000% similar) in 140 aa overlap (1-140:1-140) 10 20 30 40 50 60 ha0183 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDM :::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::: gi|513 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPSAGVGDM 10 20 30 40 50 60 70 80 90 100 110 120 ha0183 VMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|513 VMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGP 70 80 90 100 110 120 130 140 ha0183 VAKECADLWPRIASNAGSIA :::::::::::::::::::: gi|513 VAKECADLWPRIASNAGSIA 130 140 >>gi|49257378|gb|AAH73541.1| MGC82808 protein [Xenopus l (140 aa) initn: 910 init1: 910 opt: 910 Z-score: 1160.6 bits: 220.6 E(): 6.2e-56 Smith-Waterman score: 910; 99.286% identity (100.000% similar) in 140 aa overlap (1-140:1-140) 10 20 30 40 50 60 ha0183 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDM :::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::: gi|492 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGGKNLYIISVKGIKGRLNRLPAAGVGDM 10 20 30 40 50 60 70 80 90 100 110 120 ha0183 VMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|492 VMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGP 70 80 90 100 110 120 130 140 ha0183 VAKECADLWPRIASNAGSIA :::::::::::::::::::: gi|492 VAKECADLWPRIASNAGSIA 130 140 >>gi|12849613|dbj|BAB28415.1| unnamed protein product [M (140 aa) initn: 910 init1: 910 opt: 910 Z-score: 1160.6 bits: 220.6 E(): 6.2e-56 Smith-Waterman score: 910; 99.286% identity (100.000% similar) in 140 aa overlap (1-140:1-140) 10 20 30 40 50 60 ha0183 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|128 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDM 10 20 30 40 50 60 70 80 90 100 110 120 ha0183 VMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGP :::::::::::::::::::::::::::::::::::::::::::::::::::.:::::::: gi|128 VMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEIKGSAITGP 70 80 90 100 110 120 130 140 ha0183 VAKECADLWPRIASNAGSIA :::::::::::::::::::: gi|128 VAKECADLWPRIASNAGSIA 130 140 >>gi|62900930|sp|Q5REU2.1|RL23_PONAB RecName: Full=60S r (140 aa) initn: 909 init1: 909 opt: 909 Z-score: 1159.4 bits: 220.4 E(): 7.3e-56 Smith-Waterman score: 909; 99.286% identity (100.000% similar) in 140 aa overlap (1-140:1-140) 10 20 30 40 50 60 ha0183 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDM :::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::: gi|629 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGQLNRLPAAGVGDM 10 20 30 40 50 60 70 80 90 100 110 120 ha0183 VMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|629 VMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGP 70 80 90 100 110 120 130 140 ha0183 VAKECADLWPRIASNAGSIA :::::::::::::::::::: gi|629 VAKECADLWPRIASNAGSIA 130 140 >>gi|223646576|gb|ACN10046.1| 60S ribosomal protein L23 (140 aa) initn: 905 init1: 905 opt: 905 Z-score: 1154.3 bits: 219.4 E(): 1.4e-55 Smith-Waterman score: 905; 99.286% identity (99.286% similar) in 140 aa overlap (1-140:1-140) 10 20 30 40 50 60 ha0183 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|223 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDM 10 20 30 40 50 60 70 80 90 100 110 120 ha0183 VMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGP ::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::: gi|223 VMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNVKGEMKGSAITGP 70 80 90 100 110 120 130 140 ha0183 VAKECADLWPRIASNAGSIA :::::::::::::::::::: gi|223 VAKECADLWPRIASNAGSIA 130 140 >>gi|74267764|gb|AAI02557.1| Ribosomal protein L23 [Bos (140 aa) initn: 905 init1: 905 opt: 905 Z-score: 1154.3 bits: 219.4 E(): 1.4e-55 Smith-Waterman score: 905; 99.286% identity (99.286% similar) in 140 aa overlap (1-140:1-140) 10 20 30 40 50 60 ha0183 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDM ::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 MSKLGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDM 10 20 30 40 50 60 70 80 90 100 110 120 ha0183 VMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 VMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGP 70 80 90 100 110 120 130 140 ha0183 VAKECADLWPRIASNAGSIA :::::::::::::::::::: gi|742 VAKECADLWPRIASNAGSIA 130 140 >>gi|38571606|gb|AAH62716.1| Ribosomal protein L23 [Homo (140 aa) initn: 905 init1: 905 opt: 905 Z-score: 1154.3 bits: 219.4 E(): 1.4e-55 Smith-Waterman score: 905; 99.286% identity (100.000% similar) in 140 aa overlap (1-140:1-140) 10 20 30 40 50 60 ha0183 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|385 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDM 10 20 30 40 50 60 70 80 90 100 110 120 ha0183 VMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGP ::::::::::::::::.::::::::::::::::::::::::::::::::::::::::::: gi|385 VMATVKKGKPELRKKVRPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGP 70 80 90 100 110 120 130 140 ha0183 VAKECADLWPRIASNAGSIA :::::::::::::::::::: gi|385 VAKECADLWPRIASNAGSIA 130 140 >>gi|12832665|dbj|BAB22203.1| unnamed protein product [M (140 aa) initn: 904 init1: 904 opt: 904 Z-score: 1153.0 bits: 219.2 E(): 1.6e-55 Smith-Waterman score: 904; 99.286% identity (99.286% similar) in 140 aa overlap (1-140:1-140) 10 20 30 40 50 60 ha0183 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDM :::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::: gi|128 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLSAAGVGDM 10 20 30 40 50 60 70 80 90 100 110 120 ha0183 VMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|128 VMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGP 70 80 90 100 110 120 130 140 ha0183 VAKECADLWPRIASNAGSIA :::::::::::::::::::: gi|128 VAKECADLWPRIASNAGSIA 130 140 140 residues in 1 query sequences 2779448989 residues in 8089198 library sequences Tcomplib [34.26] (8 proc) start: Thu Apr 16 15:55:26 2009 done: Thu Apr 16 15:59:08 2009 Total Scan time: 658.740 Total Display time: 0.020 Function used was FASTA [version 34.26.5 April 26, 2007]