hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090416/iprscan-20090416-15590994/chunk_1/iprscan-20090416-15590994.nocrc
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Query sequence: ha01834
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N 
--------      -----------                               -----    ------- ---
PF00238.10.ls Ribosomal protein L14p/L23e               220.4    3.7e-63   1
PF00238.10.fs Ribosomal protein L14p/L23e               218.5    1.4e-62   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
PF00238.10.fs   1/1      19   140 .]     1   133 []   218.5  1.4e-62
PF00238.10.ls   1/1      19   140 .]     1   133 []   220.4  3.7e-63

Alignments of top-scoring domains:
PF00238.10.fs: domain 1 of 1, from 19 to 140: score 218.5, E = 1.4e-62
                   *->MIqkqtvLkVADNSGArevmcIrVlGgsGtvnrrryAgvGDvIvvsV
                      ++++++v+++ADN+GA+++++I+V+G++G++nr++ AgvGD+++++V
     ha01834    19    GLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATV 65   

                   KkaiPempvkkgdvvKKGdvCsAVIVRtkfKelkRkDGsfirFddNAaVi
                   Kk++Pe    +++v++      AV++R++ K+++RkDG+f++F+dNA+Vi
     ha01834    66 KKGKPE---LRKKVHP------AVVIRQR-KSYRRKDGVFLYFEDNAGVI 105  

                   InkegnPkGtrIfGPVaRElRekgFmkIaSlApeVl<-*
                   +n++g++kG+ I+GPVa+E+++  +++IaS+A++++   
     ha01834   106 VNNKGEMKGSAITGPVAKECADL-WPRIASNAGSIA    140  

PF00238.10.ls: domain 1 of 1, from 19 to 140: score 220.4, E = 3.7e-63
                   *->MIqkqtvLkVADNSGArevmcIrVlGgsGtvnrrryAgvGDvIvvsV
                      ++++++v+++ADN+GA+++++I+V+G++G++nr++ AgvGD+++++V
     ha01834    19    GLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATV 65   

                   KkaiPempvkkgdvvKKGdvCsAVIVRtkfKelkRkDGsfirFddNAaVi
                   Kk++Pe    +++v++      AV++R++ K+++RkDG+f++F+dNA+Vi
     ha01834    66 KKGKPE---LRKKVHP------AVVIRQR-KSYRRKDGVFLYFEDNAGVI 105  

                   InkegnPkGtrIfGPVaRElRekgFmkIaSlApeVl<-*
                   +n++g++kG+ I+GPVa+E+++  +++IaS+A++++   
     ha01834   106 VNNKGEMKGSAITGPVAKECADL-WPRIASNAGSIA    140  

//