hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-19005190/chunk_1/iprscan-20080811-19005190.nocrc
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Query sequence: ha01907
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00076.12.fs RNA recognition motif. (a.k.a. RRM, RBD, or     66.8    5.6e-18   1
PF00076.12.ls RNA recognition motif. (a.k.a. RRM, RBD, or     68.7    1.7e-17   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00076.12.fs   1/1     103   173 ..     1    74 []    66.8  5.6e-18
PF00076.12.ls   1/1     103   173 ..     1    74 []    68.7  1.7e-17

Alignments of top-scoring domains:
PF00076.12.fs: domain 1 of 1, from 103 to 173: score 66.8, E = 5.6e-18
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                       f gNLp+d+tee +k++F+       ++++r ++++  r kGf++ 
     ha01907   103    AFLGNLPYDVTEESIKEFFRGLNIS-AVRLPR-EPSNPERLKGFGYA 147  

                   eFedeedAekAldalnGkelggrelrv<-*
                   eFed ++  +Al+ ln+  lg+r++rv   
     ha01907   148 EFEDLDSLLSALS-LNEESLGNRRIRV    173  

PF00076.12.ls: domain 1 of 1, from 103 to 173: score 68.7, E = 1.7e-17
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                       f gNLp+d+tee +k++F+       ++++r ++++  r kGf++ 
     ha01907   103    AFLGNLPYDVTEESIKEFFRGLNIS-AVRLPR-EPSNPERLKGFGYA 147  

                   eFedeedAekAldalnGkelggrelrv<-*
                   eFed ++  +Al+ ln+  lg+r++rv   
     ha01907   148 EFEDLDSLLSALS-LNEESLGNRRIRV    173  

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