hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090806/iprscan-20090806-14122718/chunk_1/iprscan-20090806-14122718.nocrc
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Query sequence: ha01943s1
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00358                                                 142.9    3.5e-38   2
SM00487                                                 101.3    1.1e-25   1
SM00490                                                  72.2    6.4e-17   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00358      1/2       5    71 ..     1    68 []    77.1  2.1e-18
SM00358      2/2     182   252 ..     1    68 []    65.7  5.7e-15
SM00487      1/1     384   574 ..     1   219 []   101.3  1.1e-25
SM00490      1/1     665   770 ..     1    86 []    72.2  6.4e-17

Alignments of top-scoring domains:
SM00358: domain 1 of 2, from 5 to 71: score 77.1, E = 2.1e-18
                   *->pkslLqElaqkrglplpeYelvkeeGpdHaprFtvtvkvgg.kitge
                      +k+ L+ ++ kr++ +p+Ye+ + +G++++++F ++v v g ++tg+
   ha01943s1     5    VKNFLYAWCGKRKM-TPSYEIRA-VGNKNRQKFMCEVQVEGyNYTGM 49   

                   GeGsSKKeAkqaAAeaALrkLk<-*
                   G++++KK+A+++AA++++++L    
   ha01943s1    50 GNSTNKKDAQSNAARDFVNYLV    71   

SM00358: domain 2 of 2, from 182 to 252: score 65.7, E = 5.7e-15
                   *->pkslLqElaqkrglplpeYelvkeeGpdHaprFtvtvkvgg.....k
                      +k +L++++qk+++ + eY+ ++ +GpdH+++F+++ ++  ++ +++
   ha01943s1   182    AKARLNQYFQKEKI-QGEYKYTQ-VGPDHNRSFIAEMTIYIkqlgrR 226  

                   itgeGeGsSKKeAkqaAAeaALrkLk<-*
                   i+++  Gs+KK+A q +A +++r+L+   
   ha01943s1   227 IFAREHGSNKKLAAQSCALSLVRQLY    252  

SM00487: domain 1 of 1, from 384 to 574: score 101.3, E = 1.1e-25
                   *->gf.klrpyQk...eaipwllegrdvilaapTGsGKTlafllpllell
                        ++l p+ k ++e+++++ ++ +vi++++TG+GKT++ ++++l+ +
   ha01943s1   384    QErELLPVKKfesEILEAISQNSVVIIRGATGCGKTTQVPQFILDDF 430  

                   kkgkplaskkgkgprvLvlvPtreLaeQwaeelkklgpslgvyfvevlkv
                    +++     +   + ++v++P+r+ a  +ae+++ + ++ +      +k+
   ha01943s1   431 IQND-----RAAECNIVVTQPRRISAVSVAERVAFERGEEP------GKS 469  

                   vglygG.sktkekeqlrklksgktdilvtTpgrLldll.ngkglsl.nld
                   +g+  +          + l + ++ i ++T g+Ll+ l+       + ++
   ha01943s1   470 CGYSVRfE--------SILPRPHASIMFCTVGVLLRKLeA----GIrGIS 507  

                   lvilDEaHrlldmgsggdhgfgdqle.llkrl...pknrqrlllSATppe
                   +vi+DE+H+++         ++d l+ +l+ + + ++ ++++l+SAT+ +
   ha01943s1   508 HVIVDEIHERD--------INTDFLLvVLRDVvqaYPEVRIVLMSATI-D 548  

                   ienllklflnlpelfpnpvfisvgftlepieqf<-*
                      ++++f+n       p+  + g+   p++++   
   ha01943s1   549 TSMFCEYFFN------CPIIEVYGR-TYPVQEY    574  

SM00490: domain 1 of 1, from 665 to 770: score 72.2, E = 6.4e-17
                   *->delaelLkellkd..pgikvarlHGglsqeeReeilekFrkgkikvL
                       ++ ++L+ + + ++  + +++lH+++++ee++++++  + g  kv+
   ha01943s1   665    YTMQKHLEMNPHFgsHRYQILPLHSQIPREEQRKVFDPVPVGVTKVI 711  

                   vaTdvaerGlDipgvdlVInydl..................pwspasyiQ
                   ++T++ae++++i +v +VI+   ++ +  + +++ ++  + + s++++ Q
   ha01943s1   712 LSTNIAETSITINDVVYVIDSCKqkvklftahnnmtnyatvWASKTNLEQ 761  

                   RiGRaGRaG<-*
                   R GRaGR     
   ha01943s1   762 RKGRAGRVR    770  

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