hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080811/iprscan-20080811-19121040/chunk_1/iprscan-20080811-19121040.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ha02002 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF01384.11.fs Phosphate transporter family 864.5 1.1e-266 1 PF01384.11.ls Phosphate transporter family 866.6 1.1e-257 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01384.11.fs 1/1 74 687 .. 1 471 [] 864.5 1.1e-266 PF01384.11.ls 1/1 74 687 .. 1 471 [] 866.6 1.1e-257 Alignments of top-scoring domains: PF01384.11.fs: domain 1 of 1, from 74 to 687: score 864.5, E = 1.1e-266 *->iGANDvANsfGTsVGSGaLTlrqAviLAaifEflGAvllGgkVaeTI +GANDvANsfGT+VGSG++TlrqA+iLA+ifE++G+vllG+kV+eTI ha02002 74 VGANDVANSFGTAVGSGVVTLRQACILASIFETTGSVLLGAKVGETI 120 rkgivdvsgysntpallilgmvAaLlgAavWlmliAtylGlPVStTHsIV rkgi+dv+ y++t+++l++g+v+a++g+avW+ liA++l+lP+S+TH+IV ha02002 121 RKGIIDVNLYNETVETLMAGEVSAMVGSAVWQ-LIASFLRLPISGTHCIV 169 GaviGfGlAaggfGldgiqWsklgvskIvlSWviSPilagiiAfilysli G++iGf+l+a+ G+ g+qW++l+ kIv+SW+iSP+l+g ++++l+ li ha02002 170 GSTIGFSLVAI--GTKGVQWMELV--KIVASWFISPLLSGFMSGLLFVLI 215 rrsrlilrkederpvknglralPvlyaatilfnalvilykGskdlqldnl r +il+ked pv+nglralPv+yaati++n+++i+y+G+++l+l l ha02002 216 RI--FILKKED--PVPNGLRALPVFYAATIAINVFSIMYTGAPVLGLV-L 260 pialavlislgialiaaffvffvvkprmrrkiaqkvek............ p+++++lis+g+al++affv+++v+p+mrrki+ k++k++ ++ ++++ ha02002 261 PMWAIALISFGVALLFAFFVWLFVCPWMRRKITGKLQKegalsrvsdesl 310 ................atlkkhsallakaasketdvvalkasakst.l.. ++ ++ +++ ++ ++a+++++s + +a +et+ +++++sa+s+++ ha02002 311 skvqeaespvfkelpgAKANDDSTIPLTGAAGETLGTSEGTSASSHpRaa 360 .................................................. ++ + ++++ +++ ++++ + +++++++++ ++ +++++ ++ ++ ha02002 361 ygralsmthgsvkspisngtfgfdghtrsdghvyhtvhkdsglykdllhk 410 .................................................. + ++++++++ ++++ + +++++ + + + + + + + +++ + ha02002 411 ihidrgpeekpaqesnyrllrrnnsytcytaaicglpvhatfraadssap 460 ......................y.Syav.llyv.vilstgsqqmilasev +++++ +++ + ++++ + ++y+Sy++ ++++++++++g+++m+lase ha02002 461 edseklvgdtvsyskkrlrydsYsSYCNaVAEAeIEAEEGGVEMKLASEL 510 arnilkgflklleeryrsddrsvekiFsylQiitAcfmaFAHGaNDVANA a++++++++++ ee++++d ++v+++F++lQ++tAcf++FAHG+NDV+NA ha02002 511 ADPDQPREDPAEEEKEEKDAPEVHLLFHFLQVLTACFGSFAHGGNDVSNA 560 iGPlaAil.vyktggvsqkgakidvPvwvllyGglalaiGlwtgGyRVIe iGPl+A++ +yk+ggv+q++a +Pvw+l+yGg++++ Glw++G+RVI+ ha02002 561 IGPLVALWlIYKQGGVTQEAA---TPVWLLFYGGVGICTGLWVWGRRVIQ 607 TvGkkITeltPsrGFsaelgaAitVllAsklGlPVSTTHclVGaVvGVGl T+Gk++T++tPs+GF++el++A+tV++As++GlPVSTTHc+VG+Vv+VG+ ha02002 608 TMGKDLTPITPSSGFTIELASAFTVVIASNIGLPVSTTHCKVGSVVAVGW 657 arggvkaVnwrvvknIivsWivTlPvaglis<-* +r+ +kaV+wr+++nI+v+W+vT+Pvagl+s ha02002 658 IRS-RKAVDWRLFRNIFVAWFVTVPVAGLFS 687 PF01384.11.ls: domain 1 of 1, from 74 to 687: score 866.6, E = 1.1e-257 *->iGANDvANsfGTsVGSGaLTlrqAviLAaifEflGAvllGgkVaeTI +GANDvANsfGT+VGSG++TlrqA+iLA+ifE++G+vllG+kV+eTI ha02002 74 VGANDVANSFGTAVGSGVVTLRQACILASIFETTGSVLLGAKVGETI 120 rkgivdvsgysntpallilgmvAaLlgAavWlmliAtylGlPVStTHsIV rkgi+dv+ y++t+++l++g+v+a++g+avW+ liA++l+lP+S+TH+IV ha02002 121 RKGIIDVNLYNETVETLMAGEVSAMVGSAVWQ-LIASFLRLPISGTHCIV 169 GaviGfGlAaggfGldgiqWsklgvskIvlSWviSPilagiiAfilysli G++iGf+l+a+ G+ g+qW++l+ kIv+SW+iSP+l+g ++++l+ li ha02002 170 GSTIGFSLVAI--GTKGVQWMELV--KIVASWFISPLLSGFMSGLLFVLI 215 rrsrlilrkederpvknglralPvlyaatilfnalvilykGskdlqldnl r +il+ked pv+nglralPv+yaati++n+++i+y+G+++l+l l ha02002 216 RI--FILKKED--PVPNGLRALPVFYAATIAINVFSIMYTGAPVLGLV-L 260 pialavlislgialiaaffvffvvkprmrrkiaqkvek............ p+++++lis+g+al++affv+++v+p+mrrki+ k++k++ ++ ++++ ha02002 261 PMWAIALISFGVALLFAFFVWLFVCPWMRRKITGKLQKegalsrvsdesl 310 ................atlkkhsallakaasketdvvalkasakst.l.. ++ ++ +++ ++ ++a+++++s + +a +et+ +++++sa+s+++ ha02002 311 skvqeaespvfkelpgAKANDDSTIPLTGAAGETLGTSEGTSASSHpRaa 360 .................................................. ++ + ++++ +++ ++++ + +++++++++ ++ +++++ ++ ++ ha02002 361 ygralsmthgsvkspisngtfgfdghtrsdghvyhtvhkdsglykdllhk 410 .................................................. + ++++++++ ++++ + +++++ + + + + + + + +++ + ha02002 411 ihidrgpeekpaqesnyrllrrnnsytcytaaicglpvhatfraadssap 460 ......................y.Syav.llyv.vilstgsqqmilasev +++++ +++ + ++++ + ++y+Sy++ ++++++++++g+++m+lase ha02002 461 edseklvgdtvsyskkrlrydsYsSYCNaVAEAeIEAEEGGVEMKLASEL 510 arnilkgflklleeryrsddrsvekiFsylQiitAcfmaFAHGaNDVANA a++++++++++ ee++++d ++v+++F++lQ++tAcf++FAHG+NDV+NA ha02002 511 ADPDQPREDPAEEEKEEKDAPEVHLLFHFLQVLTACFGSFAHGGNDVSNA 560 iGPlaAil.vyktggvsqkgakidvPvwvllyGglalaiGlwtgGyRVIe iGPl+A++ +yk+ggv+q++a +Pvw+l+yGg++++ Glw++G+RVI+ ha02002 561 IGPLVALWlIYKQGGVTQEAA---TPVWLLFYGGVGICTGLWVWGRRVIQ 607 TvGkkITeltPsrGFsaelgaAitVllAsklGlPVSTTHclVGaVvGVGl T+Gk++T++tPs+GF++el++A+tV++As++GlPVSTTHc+VG+Vv+VG+ ha02002 608 TMGKDLTPITPSSGFTIELASAFTVVIASNIGLPVSTTHCKVGSVVAVGW 657 arggvkaVnwrvvknIivsWivTlPvaglis<-* +r+ +kaV+wr+++nI+v+W+vT+Pvagl+s ha02002 658 IRS-RKAVDWRLFRNIFVAWFVTVPVAGLFS 687 //