hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-19412305/chunk_1/iprscan-20080811-19412305.nocrc
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Query sequence: ha02361
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF01851.12.fs Proteasome/cyclosome repeat                     51.7    1.3e-14   4
PF01851.12.ls Proteasome/cyclosome repeat                     51.4    2.8e-12   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF01851.12.ls   1/3    1256  1283 ..     1    38 []     3.5      3.7
PF01851.12.fs   1/4    1256  1278 ..     1    24 [.     5.8     0.65
PF01851.12.ls   2/3    1301  1338 ..     1    38 []    17.7    0.039
PF01851.12.fs   2/4    1301  1338 ..     1    38 []    15.7  0.00071
PF01851.12.fs   3/4    1370  1396 ..     1    32 [.     1.8       11
PF01851.12.ls   3/3    1471  1505 ..     1    38 []    30.2  6.6e-06
PF01851.12.fs   4/4    1471  1505 ..     1    38 []    28.3  1.2e-07

Alignments of top-scoring domains:
PF01851.12.ls: domain 1 of 3, from 1256 to 1283: score 3.5, E = 3.7
                   *->gAilaLGliyaGsgnedealelLlvpyllsdtsnevra<-*
                      +A+ ++Gl+y G+ +   + e+Ll         +e+++   
     ha02361  1256    AAVVGIGLVYQGTAHR-HTAEVLL---------AEIGR    1283 

PF01851.12.fs: domain 1 of 4, from 1256 to 1278: score 5.8, E = 0.65
                   *->gAilaLGliyaGsgnedealelLl<-*
                      +A+ ++Gl+y G+ +   + e+Ll   
     ha02361  1256    AAVVGIGLVYQGTAHR-HTAEVLL    1278 

PF01851.12.ls: domain 2 of 3, from 1301 to 1338: score 17.7, E = 0.039
                   *->gAilaLGliyaGsgnedealelLl.vpyllsdtsnevra<-*
                      +A laLG++++G+g++  ++++L  +++ l+ +     +   
     ha02361  1301    AAGLALGMVCLGHGSNLIGMSDLNvPEQ-LYQYMVGGHR    1338 

PF01851.12.fs: domain 2 of 4, from 1301 to 1338: score 15.7, E = 0.00071
                   *->gAilaLGliyaGsgnedealelLl.vpyllsdtsnevra<-*
                      +A laLG++++G+g++  ++++L  +++ l+ +     +   
     ha02361  1301    AAGLALGMVCLGHGSNLIGMSDLNvPEQ-LYQYMVGGHR    1338 

PF01851.12.fs: domain 3 of 4, from 1370 to 1396: score 1.8, E = 11
                   *->gAilaLGliyaGsgnedealelLlvpyllsdt<-*
                      gA+laL +iy+ ++n   + + L+    ++dt   
     ha02361  1370    GATLALAMIYLKTNNR-SIADWLR----APDT    1396 

PF01851.12.ls: domain 3 of 3, from 1471 to 1505: score 30.2, E = 6.6e-06
                   *->gAilaLGliyaGsgnedealelLlvpyllsdtsnevra<-*
                      gA+l+LG+ +aGs n   a++ L+ ++ ++d  ++ +a   
     ha02361  1471    GACLSLGFRFAGSENL-SAFNCLH-KF-AKDFMTYLSA    1505 

PF01851.12.fs: domain 4 of 4, from 1471 to 1505: score 28.3, E = 1.2e-07
                   *->gAilaLGliyaGsgnedealelLlvpyllsdtsnevra<-*
                      gA+l+LG+ +aGs n   a++ L+ ++ ++d  ++ +a   
     ha02361  1471    GACLSLGFRFAGSENL-SAFNCLH-KF-AKDFMTYLSA    1505 

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