hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-14105660/chunk_1/iprscan-20090618-14105660.nocrc
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Query sequence: ha02378
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N 
--------        -----------                             -----    ------- ---
PF00096.16.ls   Zinc finger, C2H2 type                   71.3    2.8e-18   3
PF00096.16.fs   Zinc finger, C2H2 type                   65.4    1.7e-16   3
PF00249.21.fs   Myb-like DNA-binding domain              33.7    2.9e-08   1
PF00249.21.ls   Myb-like DNA-binding domain              35.4    1.8e-07   1
PF01448.14.fs   ELM2 domain                              17.2    0.00022   1
PF01448.14.ls   ELM2 domain                              18.3      0.002   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
PF00096.16.ls     1/3     596   618 ..     1    24 []    24.1  0.00046
PF01448.14.ls     1/1     780   838 ..     1    82 []    18.3    0.002
PF01448.14.fs     1/1     780   814 ..     1    51 [.    17.2  0.00022
PF00249.21.fs     1/1     888   933 ..     1    65 []    33.7  2.9e-08
PF00249.21.ls     1/1     888   933 ..     1    65 []    35.4  1.8e-07
PF00096.16.ls     2/3    1014  1038 ..     1    24 []    22.5   0.0014
PF00096.16.fs     3/3    1087  1109 ..     1    24 []    22.7   0.0002
PF00096.16.ls     3/3    1087  1109 ..     1    24 []    24.7  0.00031

Alignments of top-scoring domains:
PF00096.16.ls: domain 1 of 3, from 596 to 618: score 24.1, E = 0.00046
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                       +C+ +C k F++   L+ H+r+H   
     ha02378   596    LTCS-ICLKEFKNLPALNGHMRSH    618  

PF01448.14.ls: domain 1 of 1, from 780 to 838: score 18.3, E = 0.002
                   *->geIrVGskyQAdvPefidrqleeterdesedredLTkkedeekldel
                      + I++G ++QA++Pe+    + +++  ++               ++l
     ha02378   780    PRINIGLRFQAEIPEL----QDISALAQDTHK------------ATL 810  

                   vWsPeD.sqnqlddekideylrlarskksirtfera<-*
                   vW P  +  n +  +++++ l+l++s         a   
     ha02378   811 VWKPWPeLENHDLQQRVENLLNLCCS--------SA    838  

PF01448.14.fs: domain 1 of 1, from 780 to 814: score 17.2, E = 0.00022
                   *->geIrVGskyQAdvPefidrqleeterdesedredLTkkedeekldel
                      + I++G ++QA++Pe+    + +++  ++               ++l
     ha02378   780    PRINIGLRFQAEIPEL----QDISALAQDTHK------------ATL 810  

                   vWsP<-*
                   vW P   
     ha02378   811 VWKP    814  

PF00249.21.fs: domain 1 of 1, from 888 to 933: score 33.7, E = 2.9e-08
                   *->rgrWtaeEdellveavekhGkgfgIrlsltkanWkkIaeklgpgssn
                      +++Wt  E++l+ +a++ + k+           +  + +++      
     ha02378   888    SDKWTSLERKLFNKALATYSKD-----------FIFVQKMVK----- 918  

                   nvlgrtaeqcklryykyk<-*
                      ++t+ qc+++yy +k   
     ha02378   919 ---SKTVAQCVEYYYTWK    933  

PF00249.21.ls: domain 1 of 1, from 888 to 933: score 35.4, E = 1.8e-07
                   *->rgrWtaeEdellveavekhGkgfgIrlsltkanWkkIaeklgpgssn
                      +++Wt  E++l+ +a++ + k+           +  + +++      
     ha02378   888    SDKWTSLERKLFNKALATYSKD-----------FIFVQKMVK----- 918  

                   nvlgrtaeqcklryykyk<-*
                      ++t+ qc+++yy +k   
     ha02378   919 ---SKTVAQCVEYYYTWK    933  

PF00096.16.ls: domain 2 of 3, from 1014 to 1038: score 22.5, E = 0.0014
                   *->ykCpf.dCgksFsrksnLkrHlrtH<-*
                      + C+ + Cg +Fs++  L+ H r+H   
     ha02378  1014    FICEMpNCGAVFSSRQALNGHARIH    1038 

PF00096.16.fs: domain 3 of 3, from 1087 to 1109: score 22.7, E = 0.0002
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      + C+ +Cgk+F   ++ ++H++tH   
     ha02378  1087    FPCK-ECGKVFFKIKSRNAHMKTH    1109 

PF00096.16.ls: domain 3 of 3, from 1087 to 1109: score 24.7, E = 0.00031
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      + C+ +Cgk+F   ++ ++H++tH   
     ha02378  1087    FPCK-ECGKVFFKIKSRNAHMKTH    1109 

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