hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-14105660/chunk_1/iprscan-20090618-14105660.nocrc
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Query sequence: ha02378
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00355                                                  79.1    5.4e-19   3
SM00717                                                  33.1    3.7e-05   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00355      1/3     596   618 ..     1    23 []    27.7   0.0016
SM00717      1/1     887   935 ..     1    53 []    33.1  3.7e-05
SM00355      2/3    1014  1038 ..     1    23 []    26.7   0.0032
SM00355      3/3    1087  1109 ..     1    23 []    24.7    0.013

Alignments of top-scoring domains:
SM00355: domain 1 of 3, from 596 to 618: score 27.7, E = 0.0016
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C+i C k f++ +aL+ Hmr+H   
     ha02378   596    LTCSI-CLKEFKNLpALNGHMRSH    618  

SM00717: domain 1 of 1, from 887 to 935: score 33.1, E = 3.7e-05
                   *->kkgeWteeEdelLleavkkyGkgtdndWakIakelpgRtpkqcrerw
                        ++Wt  E +l+ +a+++y     +d+  + k++ ++t+ qc+e++
     ha02378   887    GSDKWTSLERKLFNKALATYS----KDFIFVQKMVKSKTVAQCVEYY 929  

                   rnllkp<-*
                   ++++k    
     ha02378   930 YTWKKI    935  

SM00355: domain 2 of 3, from 1014 to 1038: score 26.7, E = 0.0032
                   *->ykCpi.gCgksfssk.aLkrHmrvH<-*
                      + C++++Cg +fss++aL+ H r+H   
     ha02378  1014    FICEMpNCGAVFSSRqALNGHARIH    1038 

SM00355: domain 3 of 3, from 1087 to 1109: score 24.7, E = 0.013
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + C++ Cgk+f   ++ + Hm++H   
     ha02378  1087    FPCKE-CGKVFFKIkSRNAHMKTH    1109 

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