hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-19532906/chunk_1/iprscan-20080811-19532906.nocrc
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Query sequence: ha02542
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00225.13.ls Kinesin motor domain                           598.2   6.9e-177   1
PF00225.13.fs Kinesin motor domain                           596.6   2.2e-176   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00225.13.fs   1/1      18   340 ..     1   424 []   596.6 2.2e-176
PF00225.13.ls   1/1      18   340 ..     1   424 []   598.2 6.9e-177

Alignments of top-scoring domains:
PF00225.13.fs: domain 1 of 1, from 18 to 340: score 596.6, E = 2.2e-176
                   *->RvRPlnerEksrgssdvvnvsedvessvitn.gkektFtFDkVFdpe
                      R+RPl ++E+s+g++ ++   ++v + ++   g++k+Ft+D VFdp+
     ha02542    18    RCRPLVPKEISEGCQMCL---SFVPGEPQVVvGTDKSFTYDFVFDPS 61   

                   atQelsepYAsqefvyestakplvesvleGyNvtIFAYGQTGSGKTYTMe
                   +          qe+v++++++pl++ v++GyN+t++AYGQTGSGKTY+M+
     ha02542    62 TE---------QEEVFNTAVAPLIKGVFKGYNATVLAYGQTGSGKTYSMG 102  

                   Gstdsdks.spnpsdsCttpeeepGiiPRaledlFerieerkerkpvfKP
                   G     +++ +++      +e+  G+iPR+++ lF++i++ +        
     ha02542   103 G-----AYtAEQE------NEPTVGVIPRVIQLLFKEIDKKS-------- 133  

                   klnekgwellncqetligvsfdtrglsSdlyvedlefsvkvSylEIYNEk
                                                    d ef++kvSylEIYNE+
     ha02542   134 ---------------------------------DFEFTLKVSYLEIYNEE 150  

                   irDLLspsppqrgspskdnekkkkkpLrireDpkrGgkmdgvyVkGLtev
                   i DLL+ps+            +k   ++ireDpk+G     ++++GLte 
     ha02542   151 ILDLLCPSR------------EKAQ-INIREDPKEG-----IKIVGLTEK 182  

                   eVtsaeevlelLelGnknRtvasTkmNeeSSRSHaiFtitveqrntdttg
                   +V  a +  ++Le+Gn++RtvasT+mN +SSRSHaiFti +eqr ++   
     ha02542   183 TVLVALDTVSCLEQGNNSRTVASTAMNSQSSRSHAIFTISLEQRKKS--- 229  

                   svvtgkdnsgeesvrvskLnLVDLAGSERaskTgatgAggrRLkEaanIN
                            +++s+++skL+LVDLAGSER++kT+   A+g+RLkE+ nIN
     ha02542   230 ---------DKNSSFRSKLHLVDLAGSERQKKTK---AEGDRLKEGININ 267  

                   kSLsaLGnVInALadnqkssHiPYRDSKLTrLLQDSLGGGDNsKTlMIan
                   + L++LGnVI+AL+d +k +++PYRDSKLTrLLQDSLGG  Ns+TlMIa+
     ha02542   268 RGLLCLGNVISALGDDKKGGFVPYRDSKLTRLLQDSLGG--NSHTLMIAC 315  

                   iSPsssrNntnyeETLsTLrFAsRAKnIk<-*
                   +SP++s    n+eETL+TLr+A+RA++Ik   
     ha02542   316 VSPADS----NLEETLNTLRYADRARKIK    340  

PF00225.13.ls: domain 1 of 1, from 18 to 340: score 598.2, E = 6.9e-177
                   *->RvRPlnerEksrgssdvvnvsedvessvitn.gkektFtFDkVFdpe
                      R+RPl ++E+s+g++ ++   ++v + ++   g++k+Ft+D VFdp+
     ha02542    18    RCRPLVPKEISEGCQMCL---SFVPGEPQVVvGTDKSFTYDFVFDPS 61   

                   atQelsepYAsqefvyestakplvesvleGyNvtIFAYGQTGSGKTYTMe
                   +          qe+v++++++pl++ v++GyN+t++AYGQTGSGKTY+M+
     ha02542    62 TE---------QEEVFNTAVAPLIKGVFKGYNATVLAYGQTGSGKTYSMG 102  

                   Gstdsdks.spnpsdsCttpeeepGiiPRaledlFerieerkerkpvfKP
                   G     +++ +++      +e+  G+iPR+++ lF++i++ +        
     ha02542   103 G-----AYtAEQE------NEPTVGVIPRVIQLLFKEIDKKS-------- 133  

                   klnekgwellncqetligvsfdtrglsSdlyvedlefsvkvSylEIYNEk
                                                    d ef++kvSylEIYNE+
     ha02542   134 ---------------------------------DFEFTLKVSYLEIYNEE 150  

                   irDLLspsppqrgspskdnekkkkkpLrireDpkrGgkmdgvyVkGLtev
                   i DLL+ps+            +k   ++ireDpk+G     ++++GLte 
     ha02542   151 ILDLLCPSR------------EKAQ-INIREDPKEG-----IKIVGLTEK 182  

                   eVtsaeevlelLelGnknRtvasTkmNeeSSRSHaiFtitveqrntdttg
                   +V  a +  ++Le+Gn++RtvasT+mN +SSRSHaiFti +eqr ++   
     ha02542   183 TVLVALDTVSCLEQGNNSRTVASTAMNSQSSRSHAIFTISLEQRKKS--- 229  

                   svvtgkdnsgeesvrvskLnLVDLAGSERaskTgatgAggrRLkEaanIN
                            +++s+++skL+LVDLAGSER++kT+   A+g+RLkE+ nIN
     ha02542   230 ---------DKNSSFRSKLHLVDLAGSERQKKTK---AEGDRLKEGININ 267  

                   kSLsaLGnVInALadnqkssHiPYRDSKLTrLLQDSLGGGDNsKTlMIan
                   + L++LGnVI+AL+d +k +++PYRDSKLTrLLQDSLGG  Ns+TlMIa+
     ha02542   268 RGLLCLGNVISALGDDKKGGFVPYRDSKLTRLLQDSLGG--NSHTLMIAC 315  

                   iSPsssrNntnyeETLsTLrFAsRAKnIk<-*
                   +SP++s    n+eETL+TLr+A+RA++Ik   
     ha02542   316 VSPADS----NLEETLNTLRYADRARKIK    340  

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