hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-19532906/chunk_1/iprscan-20080811-19532906.nocrc
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Query sequence: ha02542
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00129                                                 631.4   3.1e-185   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00129     1/1      10   347 ..     1   404 []   631.4 3.1e-185

Alignments of top-scoring domains:
SM00129: domain 1 of 1, from 10 to 347: score 631.4, E = 3.1e-185
                   *->kgnIrVavRvdrdRPlnkrEksekakeespsvvtv.....tvtvn..
                        ++rVa R+   RPl  +E+se+    +++++++ +++++v+v ++
     ha02542    10    GIPVRVALRC---RPLVPKEISEG----CQMCLSFvpgepQVVVGtd 49   

                   ..FtFDkVFWrydvddpsasQedVFeevaaPLvdsaldGYNvaTIFAYGQ
                   ++Ft+D+VF      dps+ Qe+VF++ +aPL+  +++GYN+ T++AYGQ
     ha02542    50 ksFTYDFVF------DPSTEQEEVFNTAVAPLIKGVFKGYNA-TVLAYGQ 92   

                   TGSGKTyTMsGtptdpgilsndla.ditpdepGiIPRaledlFekide..
                   TGSGKTy+M+G           +a+++++   G+IPR+++ lF++id+++
     ha02542    93 TGSGKTYSMGGAY---------TAeQENEPTVGVIPRVIQLLFKEIDKks 133  

                   ...fsVkvSylEIYNEkirDLLspspenSksrGkhakqsskkkLrirEdk
                   + +f++kvSylEIYNE+i DLL+ps+e             k +  irEd+
     ha02542   134 dfeFTLKVSYLEIYNEEILDLLCPSRE-------------KAQINIREDP 170  

                   ngnrhdapkLtrlrgqggvyVvGLtevsVsSaeevlellerGnknRtvaa
                   +                g+++vGLte++V  a ++ ++le+Gn++Rtva+
     ha02542   171 K---------------EGIKIVGLTEKTVLVALDTVSCLEQGNNSRTVAS 205  

                   TkmNeeSSRSHaiFtitleqkeklepiadektesstnegteqiksskLnL
                   T+mN++SSRSHaiFti leq+              + +++ ++ +skL+L
     ha02542   206 TAMNSQSSRSHAIFTISLEQR--------------KKSDKNSSFRSKLHL 241  

                   VDLAGSERaskTgseaeGdRLkEaqnINkSLlaLGnVInALaddshdsae
                   VDLAGSER++kT+  aeGdRLkE++nIN++Ll+LGnVI+AL+d       
     ha02542   242 VDLAGSERQKKTK--AEGDRLKEGININRGLLCLGNVISALGD------- 282  

                   seatkqaggkssHIPYRDSKLTrLLQdSLGGNsKTlMIanvSPsssnyeE
                           +k +++PYRDSKLTrLLQdSLGGNs+TlMIa+vSP++sn+eE
     ha02542   283 -------DKKGGFVPYRDSKLTRLLQDSLGGNSHTLMIACVSPADSNLEE 325  

                   TlsTLrFAsRaksIknkpavne<-*
                   Tl+TLr+A+Ra++Iknkp+vn    
     ha02542   326 TLNTLRYADRARKIKNKPIVNI    347  

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