hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-20040817/chunk_1/iprscan-20080811-20040817.nocrc
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Query sequence: ha02747
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF01369.11.fs Sec7 domain                                    202.4      1e-57   1
PF01369.11.ls Sec7 domain                                    179.3    8.8e-51   1
PF00169.19.fs PH domain                                       48.9    2.1e-14   1
PF00169.19.ls PH domain                                       50.9      4e-12   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF01369.11.ls   1/1     188   396 ..     1   221 []   179.3  8.8e-51
PF01369.11.fs   1/1     249   396 ..    41   221 .]   202.4    1e-57
PF00169.19.fs   1/1     435   549 ..     1    92 []    48.9  2.1e-14
PF00169.19.ls   1/1     435   549 ..     1    92 []    50.9    4e-12

Alignments of top-scoring domains:
PF01369.11.ls: domain 1 of 1, from 188 to 396: score 179.3, E = 8.8e-51
                   *->lksrkkqliegrkkFNqkPkkGiedLiskglladdkdpqd.......
                         + +++++++++ N +    + +L++++ +   ++p+++++++ +
     ha02747   188    GDVQPDIHLTSAEHENLRTPMNSSWLPGSPMPQA-QSPEEgqrppag 233  

                   ...............iAkfLleeteGLdKkaiGefLGenddfniqvLneF
                   ++  ++ ++++   ++A++L+ ++eG++K++++ +L +n+df+ +v++e+
     ha02747   234 dklangvrnnkvawnLASRLY-RLEGFRKSEVAAYLQKNNDFSRAVAEEY 282  

                   vkNlFdFtglpLdeALRlfLksFRLPGEaQkIdRileaFSerYiqcQyNp
                   ++ +F F g +Ld ALR+fL+++ L GE+Q+++Ril  FS r+  c  Np
     ha02747   283 LS-FFQFGGQSLDRALRSFLQALVLSGETQERERILYQFSRRFHHC--NP 329  

                   gvfsnkkaEDdIecvqpdaDsayvLsYSlIMLNTDLHNNpqVKkKkikMT
                   g+f +              Ds+++L++++++LNTDLH + +++k    M+
     ha02747   330 GIFPSV-------------DSVHTLTCAIMLLNTDLH-GQNIGKS---MS 362  

                   ledFieNnrrdLREENEYEELgindGgDlprefLtelYesIkneei<-*
                   +++Fi N+             g+ dGg++p e+L++lY sI+ e++   
     ha02747   363 CQEFITNLN------------GLRDGGNFPKELLKALYWSIRSEKL    396  

PF01369.11.fs: domain 1 of 1, from 249 to 396: score 202.4, E = 1e-57
                   *->iAkfLleeteGLdKkaiGefLGenddfniqvLneFvkNlFdFtglpL
                      +A++L+ ++eG++K++++ +L +n+df+ +v++e+++ +F F g +L
     ha02747   249    LASRLY-RLEGFRKSEVAAYLQKNNDFSRAVAEEYLS-FFQFGGQSL 293  

                   deALRlfLksFRLPGEaQkIdRileaFSerYiqcQyNpgvfsnkkaEDdI
                   d ALR+fL+++ L GE+Q+++Ril  FS r+  c  Npg+f +       
     ha02747   294 DRALRSFLQALVLSGETQERERILYQFSRRFHHC--NPGIFPSV------ 335  

                   ecvqpdaDsayvLsYSlIMLNTDLHNNpqVKkKkikMTledFieNnrrdL
                          Ds+++L++++++LNTDLH + +++k    M++++Fi N+    
     ha02747   336 -------DSVHTLTCAIMLLNTDLH-GQNIGKS---MSCQEFITNLN--- 371  

                   REENEYEELgindGgDlprefLtelYesIkneei<-*
                            g+ dGg++p e+L++lY sI+ e++   
     ha02747   372 ---------GLRDGGNFPKELLKALYWSIRSEKL    396  

PF00169.19.fs: domain 1 of 1, from 435 to 549: score 48.9, E = 2.1e-14
                   *->vikeGwLlkkg...........gkkswkkRyfvLfddvLlyykdkk.
                       +k+G L +k +++ ++++++ gk++wk  +  L++ vL++ k +++
     ha02747   435    TYKQGILARKMhqdadgkktpwGKRGWKMFHTLLRGMVLYFLKGEDh 481  

                   .........kkpkgsipLsgiqvtkvpdn.krkncFeirt.dretlllqa
                     ++++  +      + + ++  t++++++k++++F++rt d++ +l+qa
     ha02747   482 clegeslvgQMVDEPVGVHHSLATPATHYtKKPHVFQLRTaDWRLYLFQA 531  

                   eseeerkeWvkaiqsair<-*
                   ++++e+ +W++ i+ a++   
     ha02747   532 PTAKEMSSWIARINLAAA    549  

PF00169.19.ls: domain 1 of 1, from 435 to 549: score 50.9, E = 4e-12
                   *->vikeGwLlkkg...........gkkswkkRyfvLfddvLlyykdkk.
                       +k+G L +k +++ ++++++ gk++wk  +  L++ vL++ k +++
     ha02747   435    TYKQGILARKMhqdadgkktpwGKRGWKMFHTLLRGMVLYFLKGEDh 481  

                   .........kkpkgsipLsgiqvtkvpdn.krkncFeirt.dretlllqa
                     ++++  +      + + ++  t++++++k++++F++rt d++ +l+qa
     ha02747   482 clegeslvgQMVDEPVGVHHSLATPATHYtKKPHVFQLRTaDWRLYLFQA 531  

                   eseeerkeWvkaiqsair<-*
                   ++++e+ +W++ i+ a++   
     ha02747   532 PTAKEMSSWIARINLAAA    549  

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