hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-20040817/chunk_1/iprscan-20080811-20040817.nocrc
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Query sequence: ha02747
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00222                                                 167.2    1.6e-45   1
SM00233                                                  49.6    4.2e-10   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00222     1/1     213   396 ..     1   226 []   167.2  1.6e-45
SM00233     1/1     435   551 ..     1    82 []    49.6  4.2e-10

Alignments of top-scoring domains:
SM00222: domain 1 of 1, from 213 to 396: score 167.2, E = 1.6e-45
                   *->sknrkkllsegikkfnqkPkkGiqfLqekgflakevDdspqevAkfl
                      + ++ +  +++ ++ ++ P  +     ++g+ ++   + + ++A+ l
     ha02747   213    LPGSPMPQAQSPEEGQRPPAGD---KLANGVRNN---KVAWNLASRL 253  

                   ydseSadadeseteglnkkaiGdyLgeshdefnrlvLhafvdlfdFsgkd
                   y          + eg+ k+ ++ yL + +++f+r+v ++++++f+F g++
     ha02747   254 Y----------RLEGFRKSEVAAYLQK-NNDFSRAVAEEYLSFFQFGGQS 292  

                   ldeALRefLesfrLPGEaQkIDRlleaFserYcecNpgvfskagkslski
                   ld+ALR fL+ + L GE+Q+++R+l +Fs r+  cNpg+f          
     ha02747   293 LDRALRSFLQALVLSGETQERERILYQFSRRFHHCNPGIFP--------- 333  

                   qqllnaDaaYvLaYSlIMLNTDLHnpnvkkskakdiLvKMtkedFikNlr
                       + D++++L++++++LNTDLH+ n++k         M++++Fi+Nl 
     ha02747   334 ----SVDSVHTLTCAIMLLNTDLHGQNIGK--------SMSCQEFITNLN 371  

                   ginkeiddgedlprefLeelYdsIknnei<-*
                   g+     dg+++p e+L++lY sI+ +++   
     ha02747   372 GLR----DGGNFPKELLKALYWSIRSEKL    396  

SM00233: domain 1 of 1, from 435 to 551: score 49.6, E = 4.2e-10
                   *->vikeGwLlkks............k.swkkryfvLfngvLlyyksk..
                      + k+G L +k +++ ++++++ +k++wk  +  L++ vL++ k +++
     ha02747   435    TYKQGILARKMhqdadgkktpwgKrGWKMFHTLLRGMVLYFLKGEdh 481  

                   ..........kpkgsipLsgcsvre.p.......cFeivt.dr.tlllqA
                     ++++  ++   +++ + +   ++ ++  +++++F+++t d++ +l+qA
     ha02747   482 clegeslvgqMVDEPVGVHHSLATPaThytkkphVFQLRTaDWrLYLFQA 531  

                   eseeereeWvealqsaiaka<-*
                   ++++e+ +W++ ++ a+a +   
     ha02747   532 PTAKEMSSWIARINLAAATH    551  

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