hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080811/iprscan-20080811-20094341/chunk_1/iprscan-20080811-20094341.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ha02782 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF07714.7.ls Protein tyrosine kinase 519.8 2.7e-153 1 PF07714.7.fs Protein tyrosine kinase 517.9 1e-152 1 PF00069.15.fs Protein kinase domain 144.8 4.9e-41 2 PF00069.15.ls Protein kinase domain 136.9 5.2e-38 1 PF00047.15.fs Immunoglobulin domain 42.7 5.7e-11 1 PF00047.15.ls Immunoglobulin domain 44.7 2.9e-10 1 PF07679.6.fs Immunoglobulin I-set domain 36.5 4.8e-10 3 PF07679.6.ls Immunoglobulin I-set domain 1.0 0.00093 1 PF07686.7.ls Immunoglobulin V-set domain 11.9 0.0031 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF07686.7.ls 1/1 224 322 .. 1 141 [] 11.9 0.0031 PF07679.6.ls 1/1 226 321 .. 1 96 [] 1.0 0.00093 PF00047.15.ls 1/1 240 306 .. 1 65 [] 44.7 2.9e-10 PF00047.15.fs 1/1 240 306 .. 1 65 [] 42.7 5.7e-11 PF07679.6.fs 1/3 287 321 .. 62 96 .] 26.6 3.7e-07 PF07714.7.fs 1/1 599 934 .. 1 272 [] 517.9 1e-152 PF00069.15.fs 1/2 599 699 .. 1 104 [. 45.6 8.1e-13 PF07714.7.ls 1/1 599 934 .. 1 272 [] 519.8 2.7e-153 PF00069.15.ls 1/1 599 934 .. 1 287 [] 136.9 5.2e-38 PF00069.15.fs 2/2 773 934 .. 103 287 .] 99.3 4.4e-28 Alignments of top-scoring domains: PF07686.7.ls: domain 1 of 1, from 224 to 322: score 11.9, E = 0.0031 *->qsqvtqepprWGLLLASLfWptsvtvaeGgsvtLpCtysGtfddsss +++v + + s eG+ t +Ct + ha02782 224 AVPVVSVSKA------------SYLLREGEEFTVTCTIK-----D-- 251 ssgtfsiyWyrqqppgkgpeliiisyysyystsegngtvgerfkgrvtls ++ s+ys ++++ + + +++++ ha02782 252 ------------VSS---------SVYSTWKRE----NSQTKLQEKYNSW 276 gnps...kgdfsLtIsnlqlsDsGtYyCavsnsnelvfgggtrLtVl<-* ++++ + ++LtIs++++ DsG+ C n+ +++ t+L V+ ha02782 277 HHGDfnyERQATLTISSARVNDSGVFMCYANNT-FGSANVTTTLEVV 322 PF07679.6.ls: domain 1 of 1, from 226 to 321: score 1.0, E = 0.00093 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtV..sWfKd..Gqplss P+ + + +eGe + +C+++ +V ++W++ ++ +l++ ha02782 226 PVVSVSKASYLLREGEEFTVTCTIKDV-SSSVysTWKREnsQTKLQE 271 vllpsdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasae +s ++ + + +tLtIs + DsG+ C+A N +G+a ++ + ha02782 272 -KYNSWHHGDFNYE--RQATLTISSARVNDSGVFMCYANNTFGSANVTTT 318 LtV<-* L V ha02782 319 LEV 321 PF00047.15.ls: domain 1 of 1, from 240 to 306: score 44.7, E = 2.9e-10 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq Ge +t tC+ + +++v+ tW+r++ ++ +++ s ++++ + + ha02782 240 GEEFTVTCTIK-DVSSSVYSTWKRENSqTKlQEKYNSWHHGDFNYER 285 t.sLtitnvtpeDggtYtCvv<-* + +Lti++++ +D+g+++C++ ha02782 286 QaTLTISSARVNDSGVFMCYA 306 PF00047.15.fs: domain 1 of 1, from 240 to 306: score 42.7, E = 5.7e-11 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq Ge +t tC+ + +++v+ tW+r++ ++ +++ s ++++ + + ha02782 240 GEEFTVTCTIK-DVSSSVYSTWKRENSqTKlQEKYNSWHHGDFNYER 285 t.sLtitnvtpeDggtYtCvv<-* + +Lti++++ +D+g+++C++ ha02782 286 QaTLTISSARVNDSGVFMCYA 306 PF07679.6.fs: domain 1 of 3, from 287 to 321: score 26.6, E = 3.7e-07 *->ytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtV<-* +tLtIs + DsG+ C+A N +G+a ++ +L V ha02782 287 ATLTISSARVNDSGVFMCYANNTFGSANVTTTLEV 321 PF07714.7.fs: domain 1 of 1, from 599 to 934: score 517.9, E = 1e-152 *->lklgkkLGeGaFGeVykGtlkg.sgdgteikVAVKtLkeigaseeei l++gk+LG+GaFG+V+++t++g +++ ++VAVK+Lk+ +a+ e ha02782 599 LSFGKTLGAGAFGKVVEATAYGlIKSDAAMTVAVKMLKP-SAHLTE- 643 eredFlrEAsiMkklGdHpNiVrLlGvctkegePggpglyiVtEymegGd re++++E+++++ lG+H NiV+LlG+ct g+P +++tEy+++Gd ha02782 644 -REALMSELKVLSYLGNHMNIVNLLGACTI-GGP----TLVITEYCCYGD 687 LldfLrkhr......................................... Ll+fLr++r++ ++++++ + ++ ++++++ ++++++ + +++ ha02782 688 LLNFLRRKRdsficskqedhaeaalyknllhskesscsdstneymdmkpg 737 ................................egrpLtlkdLlsfalQiA + +++ +++++ + ++ +++ ++ ++++ +L+l+dLlsf++Q+A ha02782 738 vsyvvptkadkrrsvrigsyierdvtpaimedDELALDLEDLLSFSYQVA 787 kGMeYLesknfvHRDLAARNcLVsenlvVKIsDFGLaRdiynddyYvrkk kGM++L+skn++HRDLAARN+L++++++ KI+DFGLaRdi nd++Y ++k ha02782 788 KGMAFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNY-VVK 836 gggklPvkWmAPEslkygkFtskSDVWSFGVlLWEiftlGeqPFYpgm.s g+++lPvkWmAPEs++++++t +SDVWS+G+ LWE+f+lG +P Ypgm+ ha02782 837 GNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSP-YPGMpV 885 neevlellyedGyRLprPenCPdelYdlMlqCWaedPedRPtFselveeL ++ +++++ ++G R+ Pe++P+e+Yd+M+ CW++dP +RPtF+++v+ + ha02782 886 DSKFYKMI-KEGFRMLSPEHAPAEMYDIMKTCWDADPLKRPTFKQIVQLI 934 <-* ha02782 - - PF00069.15.fs: domain 1 of 2, from 599 to 699: score 45.6, E = 8.1e-13 *->yelleklGsGsfGtV.....ykakhkgtgkiVAvKiikkrkekskkd + ++++lG+G+fG+V + + y ++ + +VAvK +k + ++ ha02782 599 LSFGKTLGAGAFGKVveataYGLIKSDAAMTVAVKMLKPSAHLT-ER 644 ktarrlsEiqilkrL.sHpNIvrlidvfedkdhlylVlEycegGLrvldL +++ E+++l L++H NIv l+++++ ++ +++Eyc G dL ha02782 645 EALMS--ELKVLSYLgNHMNIVNLLGACTIGGPTLVITEYCCYG----DL 688 fdylsetrrkgpl<-* +l+ r++ ++ ha02782 689 LNFLR--RKRDSF 699 PF07714.7.ls: domain 1 of 1, from 599 to 934: score 519.8, E = 2.7e-153 *->lklgkkLGeGaFGeVykGtlkg.sgdgteikVAVKtLkeigaseeei l++gk+LG+GaFG+V+++t++g +++ ++VAVK+Lk+ +a+ e ha02782 599 LSFGKTLGAGAFGKVVEATAYGlIKSDAAMTVAVKMLKP-SAHLTE- 643 eredFlrEAsiMkklGdHpNiVrLlGvctkegePggpglyiVtEymegGd re++++E+++++ lG+H NiV+LlG+ct g+P +++tEy+++Gd ha02782 644 -REALMSELKVLSYLGNHMNIVNLLGACTI-GGP----TLVITEYCCYGD 687 LldfLrkhr......................................... Ll+fLr++r++ ++++++ + ++ ++++++ ++++++ + +++ ha02782 688 LLNFLRRKRdsficskqedhaeaalyknllhskesscsdstneymdmkpg 737 ................................egrpLtlkdLlsfalQiA + +++ +++++ + ++ +++ ++ ++++ +L+l+dLlsf++Q+A ha02782 738 vsyvvptkadkrrsvrigsyierdvtpaimedDELALDLEDLLSFSYQVA 787 kGMeYLesknfvHRDLAARNcLVsenlvVKIsDFGLaRdiynddyYvrkk kGM++L+skn++HRDLAARN+L++++++ KI+DFGLaRdi nd++Y ++k ha02782 788 KGMAFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNY-VVK 836 gggklPvkWmAPEslkygkFtskSDVWSFGVlLWEiftlGeqPFYpgm.s g+++lPvkWmAPEs++++++t +SDVWS+G+ LWE+f+lG +P Ypgm+ ha02782 837 GNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSP-YPGMpV 885 neevlellyedGyRLprPenCPdelYdlMlqCWaedPedRPtFselveeL ++ +++++ ++G R+ Pe++P+e+Yd+M+ CW++dP +RPtF+++v+ + ha02782 886 DSKFYKMI-KEGFRMLSPEHAPAEMYDIMKTCWDADPLKRPTFKQIVQLI 934 <-* ha02782 - - PF00069.15.ls: domain 1 of 1, from 599 to 934: score 136.9, E = 5.2e-38 *->yelleklGsGsfGtV.....ykakhkgtgkiVAvKiikkrkekskkd + ++++lG+G+fG+V + + y ++ + +VAvK +k + ++ ha02782 599 LSFGKTLGAGAFGKVveataYGLIKSDAAMTVAVKMLKPSAHLT-ER 644 ktarrlsEiqilkrL.sHpNIvrlidvfedkdhlylVlEycegGLrvldL +++ E+++l L++H NIv l+++++ ++ +++Eyc G dL ha02782 645 EALMS--ELKVLSYLgNHMNIVNLLGACTIGGPTLVITEYCCYG----DL 688 fdyls............................................. +l++++++ ++++++ + ++ ++++++ ++++++ + +++ ha02782 689 LNFLRrkrdsficskqedhaeaalyknllhskesscsdstneymdmkpgv 738 .....................e.......trrkgpllfsedeakkialQi + +++ +++++ + ++ +++ ++ +++ +l + +++ ++ +Q+ ha02782 739 syvvptkadkrrsvrigsyieRdvtpaimEDDELAL--DLEDLLSFSYQV 786 lrgleYLHsngiiHRDLKPeNILldnngvvdaflKiaDFGlAkkls.t.s ++g+++L s+++iHRDL NILl + + Ki+DFGlA+ +++ ++ ha02782 787 AKGMAFLASKNCIHRDLAARNILLTHGRIT----KICDFGLARDIKnDsN 832 ss.lttfvGTpwYmAPEvllggngygtkvDvWSlGvilyellt.GkpPFs ++ +mAPE + + y+ ++DvWS+G+ l+el++ G P++ ha02782 833 YVvKGNARLPVKWMAPESIF-NCVYTFESDVWSYGIFLWELFSlGSSPYP 881 gevqdsldqlqlirkilgpplefdspewdsisrsefrrlpnlseeakdLi g + +++k ++ ++ spe + e+ d++ ha02782 882 GM-----PVDSKFYKMIKEGFRMLSPEHAP-------------AEMYDIM 913 kkcLnkDPskRltaeeilqHPwf<-* k c++ DP kR+t+++i+q + ha02782 914 KTCWDADPLKRPTFKQIVQL--I 934 PF00069.15.fs: domain 2 of 2, from 773 to 934: score 99.3, E = 4.4e-28 *->pllfsedeakkialQilrgleYLHsngiiHRDLKPeNILldnngvvd +l + +++ ++ +Q+++g+++L s+++iHRDL NILl + + ha02782 773 AL--DLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNILLTHGRIT- 816 aflKiaDFGlAkkls.t.sss.lttfvGTpwYmAPEvllggngygtkvDv Ki+DFGlA+ +++ ++++ +mAPE + + y+ ++Dv ha02782 817 ---KICDFGLARDIKnDsNYVvKGNARLPVKWMAPESIF-NCVYTFESDV 862 WSlGvilyellt.GkpPFsgevqdsldqlqlirkilgpplefdspewdsi WS+G+ l+el++ G P++g + +++k ++ ++ spe + ha02782 863 WSYGIFLWELFSlGSSPYPGM-----PVDSKFYKMIKEGFRMLSPEHAP- 906 srsefrrlpnlseeakdLikkcLnkDPskRltaeeilqHPwf<-* e+ d++k c++ DP kR+t+++i+q + ha02782 907 ------------AEMYDIMKTCWDADPLKRPTFKQIVQL--I 934 //