hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-20094341/chunk_1/iprscan-20080811-20094341.nocrc
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Query sequence: ha02782
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00219                                                 481.6   3.6e-140   1
SM00220                                                  88.7      7e-22   1
SM00409                                                  78.3    9.3e-19   3
SM00408                                                  29.9    0.00035   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00409    1/3      57   126 ..     1    58 []    12.9      6.9
SM00409    2/3     232   322 ..     1    58 []    48.2    1e-09
SM00408    1/1     238   311 ..     1    56 []    29.9  0.00035
SM00409    3/3     334   424 ..     1    58 []    17.2      2.2
SM00219    1/1     599   934 ..     1   280 []   481.6 3.6e-140
SM00220    1/1     599   938 ..     1   231 []    88.7    7e-22

Alignments of top-scoring domains:
SM00409: domain 1 of 3, from 57 to 126: score 12.9, E = 6.9
                   *->pp.vtvkeGesvtLtC.as.titWy..............LtI.nvtp
                       +++ v++G+ ++L C+ ++ ++W+    + ++ ++++  + +++++
     ha02782    57    KSdLIVRVGDEIRLLCtDPgFVKWTfeildetnenkqneWITeKAEA 103  

                   eDsesgGtYtCaat.sgsasseqgttLtVl<-*
                    ++   G YtC  t+++  s   ++++ V+   
     ha02782   104 TNT---GKYTC--TnKHGLSN--SIYVFVR    126  

SM00409: domain 2 of 3, from 232 to 322: score 48.2, E = 1e-09
                   *->pp.vtvkeGesvtLtC.as......titWy.................
                        +++ +eGe  t tC++++ +++ + tW++ +++++ + + ++ ++
     ha02782   232    KAsYLLREGEEFTVTCtIKdvsssvYSTWKrensqtklqekynswhh 278  

                   ..........LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<
                   ++ +  ++ +LtI++++++Ds   G++ C a+++ gsa    +ttL+V  
     ha02782   279 gdfnyerqatLTIsSARVNDS---GVFMCYANntFGSANV--TTTLEVV  322  

                   -*
                     
     ha02782     -    -    

SM00408: domain 1 of 1, from 238 to 311: score 29.9, E = 0.00035
                   *->leGqsVtLtCp.asgdpvpnItWlk...gkplp..............
                      +eG+ +t tC   + +     tW+++++ ++l+++ ++ ++++ + +
     ha02782   238    REGEEFTVTCTiKDVSSSVYSTWKRensQTKLQekynswhhgdfnye 284  

                   sgstLtiknvsleDsGlYtCvArNsvg<-*
                      tLti++++++DsG+  C+A N  g   
     ha02782   285 RQATLTISSARVNDSGVFMCYANNTFG    311  

SM00409: domain 3 of 3, from 334 to 424: score 17.2, E = 2.2
                   *->pp.vtvkeGesvtLtC.as......titWy.................
                        +v v+ Ge+v L  +++  +++ + +W   +++ +++  + +++ 
     ha02782   334    NTtVFVNDGENVDLIVeYEafpkpeHQQWIymnrtftdkwedypkse 380  

                   ..........LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<
                   + ++ +  + L++++++       GtYt  ++++  +a     ++++V  
     ha02782   381 nesniryvseLHLtRLKGTEG---GTYTFLVSnsDVNAAI--AFNVYVN  424  

                   -*
                     
     ha02782     -    -    

SM00219: domain 1 of 1, from 599 to 934: score 481.6, E = 3.6e-140
                   *->ltlgkkLGeGaFGeVykGtlk........ieVAVKtLkeda....ke
                      l++gk+LG GaFG+V+++t+++  +++  ++VAVK+Lk++a+ +++e
     ha02782   599    LSFGKTLGAGAFGKVVEATAYgliksdaaMTVAVKMLKPSAhlteRE 645  

                   eFlrEakiMkklGgkHpNiVkLlGvcteegrrFmevePlmivmEymegGd
                   ++++E+k+++ lG +H NiV+LlG+ct +       +P ++++Ey+++Gd
     ha02782   646 ALMSELKVLSYLG-NHMNIVNLLGACTIG-------GPTLVITEYCCYGD 687  

                   LldyLrknrpk.......................................
                   Ll++Lr++r+    ++++++ +    ++  ++++++ ++++++  + +++
     ha02782   688 LLNFLRRKRDSficskqedhaeaalyknllhskesscsdstneymdmkpg 737  

                   ....................................lslsdLlsfAlQIA
                    +   +++ +++++ + ++  +++ ++   ++++  l l+dLlsf++Q+A
     ha02782   738 vsyvvptkadkrrsvrigsyierdvtpaimeddelaLDLEDLLSFSYQVA 787  

                   kGMeYLesknfvHRDLAARNcLvgenkvvKIsDFGLsRdlyddDkkGesk
                   kGM++L+skn++HRDLAARN+L++++++ KI+DFGL+Rd+++d       
     ha02782   788 KGMAFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIKND------- 830  

                   dyYrkkggkggktllPirWmAPEslkdgkFtskSDVWSFGVlLWEiftlG
                   + Y++kg  +++  lP++WmAPEs++ +++t++SDVWS+G+ LWE+f+lG
     ha02782   831 SNYVVKG--NAR--LPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLG 876  

                   eqPYpgeiqqfmsneevleylkkGyRlpkPendlpiSsvtCPdelYdlMl
                    +PYpg+      ++  ++ +k+G+R+  Pe+        +P+e+Yd+M+
     ha02782   877 SSPYPGM----PVDSKFYKMIKEGFRMLSPEH--------APAEMYDIMK 914  

                   qCWaedPedRPtFselverl<-*
                   +CW++dP +RPtF+++v+++   
     ha02782   915 TCWDADPLKRPTFKQIVQLI    934  

SM00220: domain 1 of 1, from 599 to 938: score 88.7, E = 7e-22
                   *->YellkklGkGaFGkVylardkk.....tgrlvAiKvik........e
                        ++k+lG GaFGkV  a+  +  +++    vA+K++k++ + +++e
     ha02782   599    LSFGKTLGAGAFGKVVEATAYGliksdAAMTVAVKMLKpsahlterE 645  

                   rilrEikiLkk..dHPNIVkLydvfed.dklylVmEyceGdlGdLfdllk
                    +++E+k+L+  ++H NIV+L++++  ++   +++Eyc    GdL+ +l+
     ha02782   646 ALMSELKVLSYlgNHMNIVNLLGACTIgGPTLVITEYCCY--GDLLNFLR 693  

                   krgrrglr..........................................
                   +++    +++++++ +    ++  ++++++ ++++++  + +++ +   +
     ha02782   694 RKRDSFICskqedhaeaalyknllhskesscsdstneymdmkpgvsyvvp 743  

                   ............................kvlsE.earfyfrQilsaLeYL
                   ++ +++++ + ++  +++ ++   ++++  l+ ++  ++ +Q+++++++L
     ha02782   744 tkadkrrsvrigsyierdvtpaimeddeLALDLeDLLSFSYQVAKGMAFL 793  

                   HsqgIiHRDLKPeNiLLds..hvKlaDFGlArql.........ttfvGTp
                    s++ iHRDL   NiLL++++  K++DFGlAr ++++++   +       
     ha02782   794 ASKNCIHRDLAARNILLTHgrITKICDFGLARDIkndsnyvvkGNARLPV 843  

                   eYmAPEvl...gYgkpavDiWSlGcilyEllt.GkpPFp...qldlifkk
                    +mAPE + +  Y++ ++D+WS G+ l+El++ G  P+p+ + + + +k+
     ha02782   844 KWMAPESIfncVYTF-ESDVWSYGIFLWELFSlGSSPYPgmpVDSKFYKM 892  

                   ig...........SpeakdLikklLvkdPekRlta.eaLedeldikaHPf
                   i+++ +  ++++ + e+ d++k +++ dP kR+t +++ +      +   
     ha02782   893 IKegfrmlspehaPAEMYDIMKTCWDADPLKRPTFkQIVQ-----LIEKQ 937  

                   f<-*
                   +   
     ha02782   938 I    938  

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