hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-20153603/chunk_1/iprscan-20080811-20153603.nocrc
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Query sequence: ha02793
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF01388.11.ls ARID/BRIGHT DNA binding domain                 171.6    1.8e-48   1
PF01388.11.fs ARID/BRIGHT DNA binding domain                 169.7    6.9e-48   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF01388.11.fs   1/1     668   773 ..     1   116 []   169.7  6.9e-48
PF01388.11.ls   1/1     668   773 ..     1   116 []   171.6  1.8e-48

Alignments of top-scoring domains:
PF01388.11.fs: domain 1 of 1, from 668 to 773: score 169.7, E = 6.9e-48
                   *->eaqtrerkeFldrLikFmekrgtpltkiPvvgkkeLDLYrLyrlVke
                      +  ++erk+++dr+++F+e++++++t++P+vg+k+LDLYrLy++Vke
     ha02793   668    LGGEPERKMWVDRYLAFTEEKAMGMTNLPAVGRKPLDLYRLYVSVKE 714  

                   kGGfqqVtkdkkWseiareLgipdsisRGVPSsagslLrshYmryLypfE
                   +GG++qV+k+kkW+e+a++L++++s      Ssa+s+L+++Y+++Ly+fE
     ha02793   715 IGGLTQVNKNKKWRELATNLNVGTS------SSAASSLKKQYIQCLYAFE 758  

                   cyeeeenlrdeteaaddme<-*
                   c++e    r+e++++d+++   
     ha02793   759 CKIE----RGEDPPPDIFA    773  

PF01388.11.ls: domain 1 of 1, from 668 to 773: score 171.6, E = 1.8e-48
                   *->eaqtrerkeFldrLikFmekrgtpltkiPvvgkkeLDLYrLyrlVke
                      +  ++erk+++dr+++F+e++++++t++P+vg+k+LDLYrLy++Vke
     ha02793   668    LGGEPERKMWVDRYLAFTEEKAMGMTNLPAVGRKPLDLYRLYVSVKE 714  

                   kGGfqqVtkdkkWseiareLgipdsisRGVPSsagslLrshYmryLypfE
                   +GG++qV+k+kkW+e+a++L++++s      Ssa+s+L+++Y+++Ly+fE
     ha02793   715 IGGLTQVNKNKKWRELATNLNVGTS------SSAASSLKKQYIQCLYAFE 758  

                   cyeeeenlrdeteaaddme<-*
                   c++e    r+e++++d+++   
     ha02793   759 CKIE----RGEDPPPDIFA    773  

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