hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-20212566/chunk_1/iprscan-20080811-20212566.nocrc
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Query sequence: ha02919
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
SM00220                                                 336.6    1.6e-96   1
SM00219                                                 -53.6    8.1e-08   1
SM00133                                                  22.8     0.0099   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
SM00219       1/1      99   391 ..     1   280 []   -53.6  8.1e-08
SM00220       1/1      99   392 ..     1   231 []   336.6  1.6e-96
SM00133       1/1     393   457 ..     1    79 []    22.8   0.0099

Alignments of top-scoring domains:
SM00219: domain 1 of 1, from 99 to 391: score -53.6, E = 8.1e-08
                   *->ltlgkkLGeGaFGeVykGtlk...ieVAVKtLkeda......keeFl
                       + +k++G+GaFGeV++ + k+++   A K L++    +++++  ++
     ha02919    99    FESLKVIGRGAFGEVRLVQKKdtgHVYAMKILRKADmlekeqVGHIR 145  

                   rEakiMkklGgkHpNiVkLlGvcteegrrFmevePlmivmEymegGdLld
                    E  i+ +   +   +Vk++    ++         l+++mE+ +gGd   
     ha02919   146 AERDILVEA--DSLWVVKMFYSFQDK-------LNLYLIMEFLPGGDMMT 186  

                   yLrknrpklslsdLlsfAlQIAkGMeYLesknfvHRDLAARNcLvgenkv
                    L k+   l+ ++   +        + +++ +f+HRD+   N L++++++
     ha02919   187 LLMKKDT-LTEEETQFYIAETVLAIDSIHQLGFIHRDIKPDNLLLDSKGH 235  

                   vKIsDFGLsRdlyddDkkG..................eskdyYrkkggkg
                   vK sDFGL+  l+   ++ +  ++ +++ +++ + ++ +++ +  + +++
     ha02919   236 VKLSDFGLCTGLKKA-HRTefyrnlnhslpsdftfqnMNSKRKAETWKRN 284  

                   gktllPir......WmAPEslkdgkFtskSDVWSFGVlLWEiftlGeqPY
                   ++  l   + ++++  APE+++   ++   D WS GV ++E++  G +P 
     ha02919   285 RRQ-LAFStvgtpdYIAPEVFMQTGYNKLCDWWSLGVIMYEML-IGYPPF 332  

                   pgeiqqfmsneevleylkk.GyRlpkPendlpiSsvtCPdelYdlMlqCW
                           +++e ++++++  + l  P++      v  +++  dl+l+ +
     ha02919   333 CS-----ETPQETYKKVMNwKETLTFPPE------VPISEKAKDLILRFC 371  

                   aedPedR...PtFsel.verl<-*
                    e  e R + P  +e++   +   
     ha02919   372 CE-WEHRigaPGVEEIkSNSF    391  

SM00220: domain 1 of 1, from 99 to 392: score 336.6, E = 1.6e-96
                   *->YellkklGkGaFGkVylardkktgrlvAiKvik..........eril
                      +e lk++G+GaFG+V+l+++k+tg+++A+K++++ +  ++++  +i+
     ha02919    99    FESLKVIGRGAFGEVRLVQKKDTGHVYAMKILRkadmlekeqvGHIR 145  

                   rEikiLkk.dHPNIVkLydvfed.dklylVmEyceGdlGdLfdllkkrgr
                    E++iL + d  ++Vk++++f+d+ +lyl+mE+++G  Gd+++ll k+ +
     ha02919   146 AERDILVEaDSLWVVKMFYSFQDkLNLYLIMEFLPG--GDMMTLLMKKDT 193  

                   rglrkvlsE.earfyfrQilsaLeYLHsqgIiHRDLKPeNiLLds..hvK
                         l+E+e++fy++++++a++ +H++g+iHRD+KP+N+LLds++hvK
     ha02919   194 ------LTEeETQFYIAETVLAIDSIHQLGFIHRDIKPDNLLLDSkgHVK 237  

                   laDFGlArql........................................
                   l+DFGl++ l++ ++++  ++ +++ +++ + ++ +++++ ++ ++++++
     ha02919   238 LSDFGLCTGLkkahrtefyrnlnhslpsdftfqnmnskrkaetwkrnrrq 287  

                   ..ttfvGTpeYmAPEvl...gYgkpavDiWSlGcilyElltGkpPFp..q
                      + vGTp+Y+APEv+ ++gY+k  +D+WSlG+i+yE+l G+pPF++++
     ha02919   288 laFSTVGTPDYIAPEVFmqtGYNK-LCDWWSLGVIMYEMLIGYPPFCseT 336  

                   ldlifkkig..............SpeakdLikklLvkdPekRlta.eaLe
                   +++++kk+++++++ + +++ + S+ akdLi + ++ + e+R++a+ + e
     ha02919   337 PQETYKKVMnwketltfppevpiSEKAKDLILRFCC-EWEHRIGApGVEE 385  

                   deldikaHPff<-*
                       ik+  ff   
     ha02919   386 ----IKSNSFF    392  

SM00133: domain 1 of 1, from 393 to 457: score 22.8, E = 0.0099
                   *->rgiDWdkLenekkeiePPFkPkikeVyAsptDtsNFDkeFteetpvl
                       g+DW++++    e ++ +  +ik    s  DtsNFD eF+e     
     ha02919   393    EGVDWEHIR----ERPAAISIEIK----SIDDTSNFD-EFPE----- 425  

                   tpvdsalsnsiqqeeaete..ippdpFrGFsyvf<-*
                   +++ ++ +++++ +  et  +  +  F++++y++   
     ha02919   426 SDILKPTVATSNHP--ETDykNKDWVFINYTYKR    457  

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