hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-20264648/chunk_1/iprscan-20080811-20264648.nocrc
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Query sequence: ha02933
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF01534.7.ls Frizzled/Smoothened family membrane region     784.6   5.5e-233   1
PF01534.7.fs Frizzled/Smoothened family membrane region     782.6   2.1e-232   1
PF01392.12.fs Fz domain                                      229.6    2.5e-77   1
PF01392.12.ls Fz domain                                      231.4    1.8e-66   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF01392.12.fs   1/1     225   343 ..     1   147 []   229.6  2.5e-77
PF01392.12.ls   1/1     225   343 ..     1   147 []   231.4  1.8e-66
PF01534.7.fs   1/1     424   755 ..     1   343 []   782.6 2.1e-232
PF01534.7.ls   1/1     424   755 ..     1   343 []   784.6 5.5e-233

Alignments of top-scoring domains:
PF01392.12.fs: domain 1 of 1, from 225 to 343: score 229.6, E = 2.5e-77
                   *->gertarCepiraipmCkglgYNhtlmPNlLgHetGsqkeaeleqEll
                        ++++C+pi+ ip+C +++YN+t+mPNlLgH++  q++a+le    
     ha02933   225    VPDHGYCQPIS-IPLCTDIAYNQTIMPNLLGHTN--QEDAGLE---- 264  

                   llsqftpLlkvSlHLpkCspdlrfFLCslyaPvCteglrepppipPCRsl
                    ++qf+pL+kv     +Cs+ l+fFLCs+yaPvCt+ +++   +pPCRsl
     ha02933   265 -VHQFYPLVKV-----QCSAELKFFLCSMYAPVCTVLEQA---LPPCRSL 305  

                   CEavrelgCepvmeamEkkerrsnpfgfaWPesLdCskfPvpeddeelCm
                   CE++r  gCe +m++          fgf+WP++L+C+kfPv+++  elC+
     ha02933   306 CERARQ-GCEALMNK----------FGFQWPDTLKCEKFPVHGA-GELCV 343  

                   <-*
                      
     ha02933     -     -    

PF01392.12.ls: domain 1 of 1, from 225 to 343: score 231.4, E = 1.8e-66
                   *->gertarCepiraipmCkglgYNhtlmPNlLgHetGsqkeaeleqEll
                        ++++C+pi+ ip+C +++YN+t+mPNlLgH++  q++a+le    
     ha02933   225    VPDHGYCQPIS-IPLCTDIAYNQTIMPNLLGHTN--QEDAGLE---- 264  

                   llsqftpLlkvSlHLpkCspdlrfFLCslyaPvCteglrepppipPCRsl
                    ++qf+pL+kv     +Cs+ l+fFLCs+yaPvCt+ +++   +pPCRsl
     ha02933   265 -VHQFYPLVKV-----QCSAELKFFLCSMYAPVCTVLEQA---LPPCRSL 305  

                   CEavrelgCepvmeamEkkerrsnpfgfaWPesLdCskfPvpeddeelCm
                   CE++r  gCe +m++          fgf+WP++L+C+kfPv+++  elC+
     ha02933   306 CERARQ-GCEALMNK----------FGFQWPDTLKCEKFPVHGA-GELCV 343  

                   <-*
                      
     ha02933     -     -    

PF01534.7.fs: domain 1 of 1, from 424 to 755: score 782.6, E = 2.1e-232
                   *->mlFsedEkrfarsWigvwSalCflSTLFTvlTFLIDmkNRFrYPERP
                      m+F ++E+rf r+Wig+wS+lC++STLFTvlT+L+Dm+ RF+YPERP
     ha02933   424    MYFGPEELRFSRTWIGIWSVLCCASTLFTVLTYLVDMR-RFSYPERP 469  

                   IiFLSaCYlivSlgYLiglvlGaresvaCrkaeeaeagertvtqgstent
                   IiFLS CY++v+++Y++g++l  +++v+C+  ++ae+g+rtv+qg+ + +
     ha02933   470 IIFLSGCYTAVAVAYIAGFLL--EDRVVCN-DKFAEDGARTVAQGT-KKE 515  

                   sCtvlFlllYFFgMAssvWWViLtlTWFLAAglKWGthEAIeakssYFHl
                   +Ct+lF++lYFF+MAss+WWViL+lTWFLAAg+KWG hEAIea+s+YFHl
     ha02933   516 GCTILFMMLYFFSMASSIWWVILSLTWFLAAGMKWG-HEAIEANSQYFHL 564  

                   aAWglPavlTItvLalnkVDGDelsGiCfVGnlNldaLrgFVLaPLclyL
                   aAW++Pa++TIt+Lal +VDGD+lsG+CfVG++N+daLrgFVLaPL++yL
     ha02933   565 AAWAVPAIKTITILALGQVDGDVLSGVCFVGLNNVDALRGFVLAPLFVYL 614  

                   viGtsFLlaGfvSLFrIRsviktdgsetktdKLeKLMvRIGvFsvLYtVP
                   +iGtsFLlaGfvSLFrIR+++k+dg  tkt+KLeKLMvRIGvFsvLYtVP
     ha02933   615 FIGTSFLLAGFVSLFRIRTIMKHDG--TKTEKLEKLMVRIGVFSVLYTVP 662  

                   aliviaCyfYEqanrdeWerswldcickqysDReLvtiPcPvkd....ks
                   a+iviaCyfYEqa+rd+Wersw+ ++ck+y+      iPcP  + +++++
     ha02933   663 ATIVIACYFYEQAFRDQWERSWVAQSCKSYA------IPCPHLQagggAP 706  

                   gdpearPeslaVfmlKylmsLvVGItsgvWVwSsKTlesWrrfirrlcgr
                   ++p+++P+ ++Vfm+Kylm+L+VGItsg+W+wS+KTl+sWr+f++rl+++
     ha02933   707 PHPPMSPD-FTVFMIKYLMTLIVGITSGFWIWSGKTLNSWRKFYTRLTNS 755  

                   <-*
                      
     ha02933     -     -    

PF01534.7.ls: domain 1 of 1, from 424 to 755: score 784.6, E = 5.5e-233
                   *->mlFsedEkrfarsWigvwSalCflSTLFTvlTFLIDmkNRFrYPERP
                      m+F ++E+rf r+Wig+wS+lC++STLFTvlT+L+Dm+ RF+YPERP
     ha02933   424    MYFGPEELRFSRTWIGIWSVLCCASTLFTVLTYLVDMR-RFSYPERP 469  

                   IiFLSaCYlivSlgYLiglvlGaresvaCrkaeeaeagertvtqgstent
                   IiFLS CY++v+++Y++g++l  +++v+C+  ++ae+g+rtv+qg+ + +
     ha02933   470 IIFLSGCYTAVAVAYIAGFLL--EDRVVCN-DKFAEDGARTVAQGT-KKE 515  

                   sCtvlFlllYFFgMAssvWWViLtlTWFLAAglKWGthEAIeakssYFHl
                   +Ct+lF++lYFF+MAss+WWViL+lTWFLAAg+KWG hEAIea+s+YFHl
     ha02933   516 GCTILFMMLYFFSMASSIWWVILSLTWFLAAGMKWG-HEAIEANSQYFHL 564  

                   aAWglPavlTItvLalnkVDGDelsGiCfVGnlNldaLrgFVLaPLclyL
                   aAW++Pa++TIt+Lal +VDGD+lsG+CfVG++N+daLrgFVLaPL++yL
     ha02933   565 AAWAVPAIKTITILALGQVDGDVLSGVCFVGLNNVDALRGFVLAPLFVYL 614  

                   viGtsFLlaGfvSLFrIRsviktdgsetktdKLeKLMvRIGvFsvLYtVP
                   +iGtsFLlaGfvSLFrIR+++k+dg  tkt+KLeKLMvRIGvFsvLYtVP
     ha02933   615 FIGTSFLLAGFVSLFRIRTIMKHDG--TKTEKLEKLMVRIGVFSVLYTVP 662  

                   aliviaCyfYEqanrdeWerswldcickqysDReLvtiPcPvkd....ks
                   a+iviaCyfYEqa+rd+Wersw+ ++ck+y+      iPcP  + +++++
     ha02933   663 ATIVIACYFYEQAFRDQWERSWVAQSCKSYA------IPCPHLQagggAP 706  

                   gdpearPeslaVfmlKylmsLvVGItsgvWVwSsKTlesWrrfirrlcgr
                   ++p+++P+ ++Vfm+Kylm+L+VGItsg+W+wS+KTl+sWr+f++rl+++
     ha02933   707 PHPPMSPD-FTVFMIKYLMTLIVGITSGFWIWSGKTLNSWRKFYTRLTNS 755  

                   <-*
                      
     ha02933     -     -    

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