hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-20373594/chunk_1/iprscan-20080811-20373594.nocrc
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Query sequence: ha02979
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF08514.2.ls STAG domain                                    254.3    2.3e-73   1
PF08514.2.fs STAG domain                                    252.5    8.3e-73   1
PF02985.12.ls HEAT repeat                                     20.5     0.0055   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF08514.2.fs   1/1     174   293 ..     1   130 []   252.5  8.3e-73
PF08514.2.ls   1/1     174   293 ..     1   130 []   254.3  2.3e-73

Alignments of top-scoring domains:
PF08514.2.fs: domain 1 of 1, from 174 to 293: score 252.5, E = 8.3e-73
                   *->edsaDYPLvskgpklKkFrenLveFlstLViqcqdnslLYDdksaeG
                      eds+DYPL+++gp++KkFr+n++eF+ +L++qcq +s++YD+     
     ha02979   174    EDSGDYPLTMPGPQWKKFRSNFCEFIGVLIRQCQ-YSIIYDE----- 214  

                   vlmDnliswlvaLSsSqvRafRHTATlvaLklmTaLvsVakeLsnskett
                   ++mD++is+l++LS+SqvRafRHT+Tl+a+klmTaLv+Va++Ls + ++t
     ha02979   215 YMMDTVISLLTGLSDSQVRAFRHTSTLAAMKLMTALVNVALNLSIHQDNT 264  

                   qKQLtEAEkkKsrdnraneRvdsLnskLgirke<-*
                   q+Q+ EAE++K+  +raneR++ L++k   rke   
     ha02979   265 QRQY-EAERNKMIGKRANERLELLLQK---RKE    293  

PF08514.2.ls: domain 1 of 1, from 174 to 293: score 254.3, E = 2.3e-73
                   *->edsaDYPLvskgpklKkFrenLveFlstLViqcqdnslLYDdksaeG
                      eds+DYPL+++gp++KkFr+n++eF+ +L++qcq +s++YD+     
     ha02979   174    EDSGDYPLTMPGPQWKKFRSNFCEFIGVLIRQCQ-YSIIYDE----- 214  

                   vlmDnliswlvaLSsSqvRafRHTATlvaLklmTaLvsVakeLsnskett
                   ++mD++is+l++LS+SqvRafRHT+Tl+a+klmTaLv+Va++Ls + ++t
     ha02979   215 YMMDTVISLLTGLSDSQVRAFRHTSTLAAMKLMTALVNVALNLSIHQDNT 264  

                   qKQLtEAEkkKsrdnraneRvdsLnskLgirke<-*
                   q+Q+ EAE++K+  +raneR++ L++k   rke   
     ha02979   265 QRQY-EAERNKMIGKRANERLELLLQK---RKE    293  

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