hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-14232696/chunk_1/iprscan-20090618-14232696.nocrc
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Query sequence: ha03113
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N 
--------      -----------                               -----    ------- ---
PF01545.11.ls Cation efflux family                      302.5      7e-88   1
PF01545.11.fs Cation efflux family                      300.7    2.5e-87   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
PF01545.11.fs   1/1     448   762 ..     1   303 []   300.7  2.5e-87
PF01545.11.ls   1/1     448   762 ..     1   303 []   302.5    7e-88

Alignments of top-scoring domains:
PF01545.11.fs: domain 1 of 1, from 448 to 762: score 300.7, E = 2.5e-87
                   *->lwislalnlllavvkliaGllsgSlALlaDavHslsDvaaslislla
                      ++++l+lnll+++v+l++G+l++Sl L++D++H+l+D+ a+++ l+a
     ha03113   448    IFYFLCLNLLFTFVELFYGVLTNSLGLISDGFHMLFDCSALVMGLFA 494  

                   lkiarkPaDrrhpfGhgRaEiLaalinavllfvvglggfilyEaierlls
                     ++r++a+r +++G+gR+EiL+++in+++l+v+++  f+++E++ rl+ 
     ha03113   495 ALMSRWKATRIFSYGYGRIEILSGFINGLFLIVIAF--FVFMESVARLID 542  

                   PyeeydSSagdahepvdpglialivalislvvnlllalyllrvgkktnsg
                   P            ++ d+  + + v++++l+vnl+    + ++ +++  g
     ha03113   543 P------------PELDTH-MLTPVSVGGLIVNLIGICAFSHA-HSHAHG 578  

                   ....................................dpalraaalHvlsD
                    ++++ ++++++++++ ++++++++++++++ +++ + ++r+++lHvl+D
     ha03113   579 asqgschssdhshshhmhghsdhghghshgsagggmNANMRGVFLHVLAD 628  

                   lLgSigvlvgalliyftgnglheWpwaDPiaallIsllIlktafrllkes
                   +LgSigv+v+++li  +g     W +aDP+++l+I++lI+ + ++l+k++
     ha03113   629 TLGSIGVIVSTVLIEQFG-----WFIADPLCSLFIAILIFLSVVPLIKDA 673  

                   vniLldgvppeedle..kireillsipgVkgvhdlhtwsiGpgefvlsvH
                    ++Ll + ppe + e ++  e + +i+g +++ d h+w+++ ++++ ++H
     ha03113   674 CQVLLLRLPPEYEKElhIALEKIQKIEGLISYRDPHFWRHSASIVAGTIH 723  

                   ievdpdlsleeaheiadeiekrlleefpeiehvtihvepagcee<-*
                   i+v +d  +    + +++    +l++ + + + ti+ve +   +   
     ha03113   724 IQVTSDVLE----QRIVQQVTGILKDAG-VNNLTIQVEKEAYFQ    762  

PF01545.11.ls: domain 1 of 1, from 448 to 762: score 302.5, E = 7e-88
                   *->lwislalnlllavvkliaGllsgSlALlaDavHslsDvaaslislla
                      ++++l+lnll+++v+l++G+l++Sl L++D++H+l+D+ a+++ l+a
     ha03113   448    IFYFLCLNLLFTFVELFYGVLTNSLGLISDGFHMLFDCSALVMGLFA 494  

                   lkiarkPaDrrhpfGhgRaEiLaalinavllfvvglggfilyEaierlls
                     ++r++a+r +++G+gR+EiL+++in+++l+v+++  f+++E++ rl+ 
     ha03113   495 ALMSRWKATRIFSYGYGRIEILSGFINGLFLIVIAF--FVFMESVARLID 542  

                   PyeeydSSagdahepvdpglialivalislvvnlllalyllrvgkktnsg
                   P            ++ d+  + + v++++l+vnl+    + ++ +++  g
     ha03113   543 P------------PELDTH-MLTPVSVGGLIVNLIGICAFSHA-HSHAHG 578  

                   ....................................dpalraaalHvlsD
                    ++++ ++++++++++ ++++++++++++++ +++ + ++r+++lHvl+D
     ha03113   579 asqgschssdhshshhmhghsdhghghshgsagggmNANMRGVFLHVLAD 628  

                   lLgSigvlvgalliyftgnglheWpwaDPiaallIsllIlktafrllkes
                   +LgSigv+v+++li  +g     W +aDP+++l+I++lI+ + ++l+k++
     ha03113   629 TLGSIGVIVSTVLIEQFG-----WFIADPLCSLFIAILIFLSVVPLIKDA 673  

                   vniLldgvppeedle..kireillsipgVkgvhdlhtwsiGpgefvlsvH
                    ++Ll + ppe + e ++  e + +i+g +++ d h+w+++ ++++ ++H
     ha03113   674 CQVLLLRLPPEYEKElhIALEKIQKIEGLISYRDPHFWRHSASIVAGTIH 723  

                   ievdpdlsleeaheiadeiekrlleefpeiehvtihvepagcee<-*
                   i+v +d  +    + +++    +l++ + + + ti+ve +   +   
     ha03113   724 IQVTSDVLE----QRIVQQVTGILKDAG-VNNLTIQVEKEAYFQ    762  

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