hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/TIGRFAMs_HMM.LIB.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-14232696/chunk_1/iprscan-20090618-14232696.nocrc
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Query sequence: ha03113
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TIGR01297 CDF: cation diffusion facilitator family tra   284.1    8.9e-83   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TIGR01297   1/1     444   760 ..     1   294 []   284.1  8.9e-83

Alignments of top-scoring domains:
TIGR01297: domain 1 of 1, from 444 to 760: score 284.1, E = 8.9e-83
                   *->gkrallislllnlllllvelvgGllsgslalladalhslsDvlalli
                      ++r ++++l+lnll+++vel++G+l++sl+l++d++h+l+D+ al++
     ha03113   444    DSRQIFYFLCLNLLFTFVELFYGVLTNSLGLISDGFHMLFDCSALVM 490  

                   allalrlsekppderhpfGygraevlaallnglflvvvalfilyeaierl
                   +l+a  +s++++++ +++Gygr+e+l++++nglfl+v+a+f+++e++ rl
     ha03113   491 GLFAALMSRWKATRIFSYGYGRIEILSGFINGLFLIVIAFFVFMESVARL 540  

                   lnghapeeidg.lalivaglgllvnlilallllrgh.gghklgh......
                   ++   p+e d++++  v+++gl+vnli  + ++++h+++h+ ++++ +++
     ha03113   541 ID---PPELDThMLTPVSVGGLIVNLIGICAFSHAHsHAHGASQgschss 587  

                   .........................g.slnlraaalhvlgDllgslgvli
                   +++++++ ++++++++++++++ ++g + n+r+++lhvl+D+lgs+gv++
     ha03113   588 dhshshhmhghsdhghghshgsaggGmNANMRGVFLHVLADTLGSIGVIV 637  

                   galliyfgpfgwtwadpiaallisllilytafrllkesinvlldgapp.e
                   +++li  +  gw++adp+++l+i++li+ + ++l+k++++vll + pp+ 
     ha03113   638 STVLIEQF--GWFIADPLCSLFIAILIFLSVVPLIKDACQVLLLRLPPeY 685  

                   lldlievkkvlllsipgvkgvhdlhiwrigpgklvldvhvevdpdldlke
                   +++l+ +++++  +i+g+++++d h wr++ + ++ ++h++v +d++   
     ha03113   686 EKELHIALEKIQ-KIEGLISYRDPHFWRHSASIVAGTIHIQVTSDVL--- 731  

                   ahdialeiereilkrhpfgiehvtihveplge<-*
                    ++ ++++  +ilk+  +g++++ti+ve + +   
     ha03113   732 -EQRIVQQVTGILKD--AGVNNLTIQVEKEAY    760  

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