hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-14172346/chunk_1/iprscan-20090618-14172346.nocrc
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Query sequence: ha03243
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00319.9.fs SRF-type transcription factor (DNA-binding a    90.4    8.1e-25   1
PF00319.9.ls SRF-type transcription factor (DNA-binding a    92.4    1.3e-24   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00319.9.fs   1/1      11    61 ..     1    51 []    90.4  8.1e-25
PF00319.9.ls   1/1      11    61 ..     1    51 []    92.4  1.3e-24

Alignments of top-scoring domains:
PF00319.9.fs: domain 1 of 1, from 11 to 61: score 90.4, E = 8.1e-25
                   *->krIenksnrqVTfsKRrnGllKKAhELSVLCdaeVaviifsstGkly
                       rI +++nrqVTf+KR+ Gl+KKA+ELSVLCd e+a+iif s++kl+
     ha03243    11    TRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLF 57   

                   eyss<-*
                    y+s   
     ha03243    58 QYAS    61   

PF00319.9.ls: domain 1 of 1, from 11 to 61: score 92.4, E = 1.3e-24
                   *->krIenksnrqVTfsKRrnGllKKAhELSVLCdaeVaviifsstGkly
                       rI +++nrqVTf+KR+ Gl+KKA+ELSVLCd e+a+iif s++kl+
     ha03243    11    TRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLF 57   

                   eyss<-*
                    y+s   
     ha03243    58 QYAS    61   

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