hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090525/iprscan-20090525-15581262/chunk_1/iprscan-20090525-15581262.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ha03751 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF07714.7.ls Protein tyrosine kinase 482.0 6.6e-142 1 PF07714.7.fs Protein tyrosine kinase 480.1 2.5e-141 1 PF00069.15.fs Protein kinase domain 139.7 1.4e-39 1 PF00069.15.ls Protein kinase domain 141.6 2e-39 1 PF00041.11.fs Fibronectin type III domain 45.6 1.9e-12 3 PF00047.15.fs Immunoglobulin domain 47.8 2.3e-12 2 PF00047.15.ls Immunoglobulin domain 51.5 2.5e-12 2 PF00041.11.ls Fibronectin type III domain 42.4 1.4e-09 2 PF07679.6.fs Immunoglobulin I-set domain 26.0 5.8e-07 2 PF07686.7.ls Immunoglobulin V-set domain 11.7 0.0033 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF07686.7.ls 1/1 119 249 .. 1 141 [] 11.7 0.0033 PF00047.15.ls 1/2 163 232 .. 1 65 [] 31.2 3.3e-06 PF00047.15.fs 1/2 163 232 .. 1 65 [] 29.2 2.9e-07 PF00047.15.fs 2/2 266 319 .. 1 65 [] 18.6 0.00024 PF00047.15.ls 2/2 266 319 .. 1 65 [] 20.3 0.0063 PF00041.11.ls 1/2 339 423 .. 1 84 [] 32.3 1.5e-06 PF00041.11.fs 1/3 339 423 .. 1 84 [] 30.4 4.3e-08 PF00041.11.ls 2/2 438 528 .. 1 84 [] 10.1 0.014 PF00069.15.fs 1/1 642 909 .. 1 287 [] 139.7 1.4e-39 PF00069.15.ls 1/1 642 909 .. 1 287 [] 141.6 2e-39 PF07714.7.ls 1/1 642 909 .. 1 272 [] 482.0 6.6e-142 PF07714.7.fs 1/1 642 909 .. 1 272 [] 480.1 2.5e-141 Alignments of top-scoring domains: PF07686.7.ls: domain 1 of 1, from 119 to 249: score 11.7, E = 0.0033 *->qsqvtqepprWGLLLASLfWp.t........................ +++ tq p r p+t++ ++ ++ ++++ ++ +++ ha03751 119 MFSPTQ-PGR----------PhTgnvaipqvtsveskplpplafkht 154 ..svtvaeGgsvtLpCtysGtfddsssssgtfsiyWyrqqppgkgpelii ++++ +e + v+++C+ s + +++++i+W + +++ l + ha03751 155 vgHIILSEHKGVKFNCSIS-----VPNIYQDTTISWWK----DGKELLGA 195 isyysyystsegngtvgerfkgrvtlsgnpskgdfsLtIsnlqlsDsGtY ++ ++++ + +s +I+++q+sD+G Y ha03751 196 -----HHAIT----QFYPDDEVTAI--------IASFSITSVQRSDNGSY 228 yCavsnsnelvfgggtrLtVl<-* C + ne + + V ha03751 229 ICKMKINNEEIVSDPIYIEVQ 249 PF00047.15.ls: domain 1 of 2, from 163 to 232: score 31.2, E = 3.3e-06 *->GesvtLtCsvs.gfgppdvtvtWlrngk.lt.gvlvtssenngdsty ++ v+++Cs s d+t++W+++gk+l + +++ + + +d ++ ha03751 163 HKGVKFNCSISvPNIYQDTTISWWKDGKeLLgAHHAITQFYPDDEVT 209 qt..sLtitnvtpeDggtYtCvv<-* + s++it+v+++D+g+Y C ha03751 210 AIiaSFSITSVQRSDNGSYICKM 232 PF00047.15.fs: domain 1 of 2, from 163 to 232: score 29.2, E = 2.9e-07 *->GesvtLtCsvs.gfgppdvtvtWlrngk.lt.gvlvtssenngdsty ++ v+++Cs s d+t++W+++gk+l + +++ + + +d ++ ha03751 163 HKGVKFNCSISvPNIYQDTTISWWKDGKeLLgAHHAITQFYPDDEVT 209 qt..sLtitnvtpeDggtYtCvv<-* + s++it+v+++D+g+Y C ha03751 210 AIiaSFSITSVQRSDNGSYICKM 232 PF00047.15.fs: domain 2 of 2, from 266 to 319: score 18.6, E = 0.00024 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq + ++LtC++ + p++v+++W +n+ ++ + + s+ ha03751 266 NTAFNLTCQAV-GPPEPVNIFWVQNSSrVNeQPEKSPSV-------- 303 tsLtitnvtpeDggtYtCvv<-* Lt+ +t ++++C++ ha03751 304 --LTVPGLT--EMAVFSCEA 319 PF00047.15.ls: domain 2 of 2, from 266 to 319: score 20.3, E = 0.0063 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq + ++LtC++ + p++v+++W +n+ ++ + + s+ ha03751 266 NTAFNLTCQAV-GPPEPVNIFWVQNSSrVNeQPEKSPSV-------- 303 tsLtitnvtpeDggtYtCvv<-* Lt+ +t ++++C++ ha03751 304 --LTVPGLT--EMAVFSCEA 319 PF00041.11.ls: domain 1 of 2, from 339 to 423: score 32.3, E = 1.5e-06 *->PsaPtnltvtdvtstsltlsWspPt.gngpitgYevtyRqpkngge. Ps+Pt +++++ t+ s+ +sW p ++g +p+ + ++++ +++ ++ + ha03751 339 PSPPTEVSIRNSTAHSILISWVPGFdGYSPFRNCSIQV-KEA-DPLs 383 .....wkeltvpgtttsytltgLkPgteYtvrVqAvnggGGpeS<-* +++ ++ + ++ y+++ L++ +Y++ V n++ ++S ha03751 384 ngsvmIFNTSALPHL--YQIKQLQALANYSIGVSCMNEI--GWS 423 PF00041.11.fs: domain 1 of 3, from 339 to 423: score 30.4, E = 4.3e-08 *->PsaPtnltvtdvtstsltlsWspPt.gngpitgYevtyRqpkngge. Ps+Pt +++++ t+ s+ +sW p ++g +p+ + ++++ +++ ++ + ha03751 339 PSPPTEVSIRNSTAHSILISWVPGFdGYSPFRNCSIQV-KEA-DPLs 383 .....wkeltvpgtttsytltgLkPgteYtvrVqAvnggGGpeS<-* +++ ++ + ++ y+++ L++ +Y++ V n++ ++S ha03751 384 ngsvmIFNTSALPHL--YQIKQLQALANYSIGVSCMNEI--GWS 423 PF00041.11.ls: domain 2 of 2, from 438 to 528: score 10.1, E = 0.014 *->P.saPtnltv.tdvtstsltlsWspPt...gngpitgYevtyRqpkn P+ aP n+tv + +s+ + ++W +P++++ +g++ gY++ ++ ha03751 438 PsVAPLNVTVfLNESSDNVDIRWMKPPtkqQDGELVGYRISH-VWQS 483 gge......wkeltvpgtttsytltgLkPgteYtvrVqAvnggG.GpeS< g +++ +++ ++ ++ s+++++ + tvr++Av+ gG Gp+S ha03751 484 AGIskelleEVGQNGSRARISVQVHN----ATCTVRIAAVTKGGvGPFS 528 -* ha03751 - - PF00069.15.fs: domain 1 of 1, from 642 to 909: score 139.7, E = 1.4e-39 *->yelleklGsGsfGtV...ykakhkgtgkiVAvKiikkrkekskkdkt + l+++lG+G fG+V ++ + ++ gt+ +VAvK++k+++ + + ++ ha03751 642 LILGKILGEGEFGSVmegNLKQEDGTSLKVAVKTMKLDNSSQREIEE 688 arrlsEiqilkrLsHpNIvrlidvfed.....kdhlylVlEycegGLrvl + E++ +k +sHpN++rl++v+ + ++++ +++ ++l+++ G ha03751 689 FLS--EAACMKDFSHPNVIRLLGVCIEmssqgIPKPMVILPFMKYG---- 732 dLfdylsetrrk......gpllfsedeakkialQilrgleYLHsngiiHR dL++yl +++ +++++ + + +++ k++ i+ g+eYL +++++HR ha03751 733 DLHTYLL---YSrletgpKHI--PLQTLLKFMVDIALGMEYLSNRNFLHR 777 DLKPeNILldnngvvdaflKiaDFGlAkkls....t.sss.lttfvGTpw DL N++l ++++v ++aDFGl+kk+++++ ++ ++ ++ +v ha03751 778 DLAARNCMLRDDMTV----CVADFGLSKKIYsgdyYrQGRiAKMPV---K 820 YmAPEvllggngygtkvDvWSlGvilyellt.GkpPFsgevqdsldqlql ++A E l ++ y++k+DvW++Gv+++e +t+G +P++g ++ ha03751 821 WIAIESLA-DRVYTSKSDVWAFGVTMWEIATrGMTPYPGV-----QNHEM 864 irkilgpplefdspewdsisrsefrrlpnlseeakdLikkcLnkDPskRl ++ l++ + pe++ +e+ +++++c++ DP +R+ ha03751 865 YDYLLHGH-RLKQPEDCL-------------DELYEIMYSCWRTDPLDRP 900 taeeilqHPwf<-* t+ + + ha03751 901 TFSVLRLQ--L 909 PF00069.15.ls: domain 1 of 1, from 642 to 909: score 141.6, E = 2e-39 *->yelleklGsGsfGtV...ykakhkgtgkiVAvKiikkrkekskkdkt + l+++lG+G fG+V ++ + ++ gt+ +VAvK++k+++ + + ++ ha03751 642 LILGKILGEGEFGSVmegNLKQEDGTSLKVAVKTMKLDNSSQREIEE 688 arrlsEiqilkrLsHpNIvrlidvfed.....kdhlylVlEycegGLrvl + E++ +k +sHpN++rl++v+ + ++++ +++ ++l+++ G ha03751 689 FLS--EAACMKDFSHPNVIRLLGVCIEmssqgIPKPMVILPFMKYG---- 732 dLfdylsetrrk......gpllfsedeakkialQilrgleYLHsngiiHR dL++yl +++ +++++ + + +++ k++ i+ g+eYL +++++HR ha03751 733 DLHTYLL---YSrletgpKHI--PLQTLLKFMVDIALGMEYLSNRNFLHR 777 DLKPeNILldnngvvdaflKiaDFGlAkkls....t.sss.lttfvGTpw DL N++l ++++v ++aDFGl+kk+++++ ++ ++ ++ +v ha03751 778 DLAARNCMLRDDMTV----CVADFGLSKKIYsgdyYrQGRiAKMPV---K 820 YmAPEvllggngygtkvDvWSlGvilyellt.GkpPFsgevqdsldqlql ++A E l ++ y++k+DvW++Gv+++e +t+G +P++g ++ ha03751 821 WIAIESLA-DRVYTSKSDVWAFGVTMWEIATrGMTPYPGV-----QNHEM 864 irkilgpplefdspewdsisrsefrrlpnlseeakdLikkcLnkDPskRl ++ l++ + pe++ +e+ +++++c++ DP +R+ ha03751 865 YDYLLHGH-RLKQPEDCL-------------DELYEIMYSCWRTDPLDRP 900 taeeilqHPwf<-* t+ + + ha03751 901 TFSVLRLQ--L 909 PF07714.7.ls: domain 1 of 1, from 642 to 909: score 482.0, E = 6.6e-142 *->lklgkkLGeGaFGeVykGtlkgsgdgteikVAVKtL.keigaseeei l+lgk LGeG+FG+V++G lk ++dgt +kVAVKt++ + ++s++e ha03751 642 LILGKILGEGEFGSVMEGNLK-QEDGTSLKVAVKTMkLD-NSSQRE- 685 eredFlrEAsiMkklGdHpNiVrLlGvctkegePggpg.lyiVtEymegG +e+Fl+EA+ Mk + +HpN++rLlGvc++ ++g +++++++++m++G ha03751 686 -IEEFLSEAACMKDF-SHPNVIRLLGVCIE-MSSQGIPkPMVILPFMKYG 732 dLldfLrkhr...egrpLtlkdLlsfalQiAkGMeYLesknfvHRDLAAR dL+++L r ++++++++l++Ll+f+++iA GMeYL+++nf HRDLAAR ha03751 733 DLHTYLLYSRletGPKHIPLQTLLKFMVDIALGMEYLSNRNFLHRDLAAR 782 NcLVsenlvVKIsDFGLaRdiynddyYvrkkgggklPvkWmAPEslkygk Nc++ ++++V ++DFGL++ iy+ dyY r++ +k+PvkW A Esl++++ ha03751 783 NCMLRDDMTVCVADFGLSKKIYSGDYY-RQGRIAKMPVKWIAIESLADRV 831 FtskSDVWSFGVlLWEiftlGeqPFYpgmsneevlellyedGyRLprPen +tskSDVW+FGV++WEi t+G++P Ypg+ n+e++++l +G+RL++Pe+ ha03751 832 YTSKSDVWAFGVTMWEIATRGMTP-YPGVQNHEMYDYL-LHGHRLKQPED 879 CPdelYdlMlqCWaedPedRPtFselveeL<-* C delY++M +CW+ dP dRPtFs l+ +L ha03751 880 CLDELYEIMYSCWRTDPLDRPTFSVLRLQL 909 PF07714.7.fs: domain 1 of 1, from 642 to 909: score 480.1, E = 2.5e-141 *->lklgkkLGeGaFGeVykGtlkgsgdgteikVAVKtL.keigaseeei l+lgk LGeG+FG+V++G lk ++dgt +kVAVKt++ + ++s++e ha03751 642 LILGKILGEGEFGSVMEGNLK-QEDGTSLKVAVKTMkLD-NSSQRE- 685 eredFlrEAsiMkklGdHpNiVrLlGvctkegePggpg.lyiVtEymegG +e+Fl+EA+ Mk + +HpN++rLlGvc++ ++g +++++++++m++G ha03751 686 -IEEFLSEAACMKDF-SHPNVIRLLGVCIE-MSSQGIPkPMVILPFMKYG 732 dLldfLrkhr...egrpLtlkdLlsfalQiAkGMeYLesknfvHRDLAAR dL+++L r ++++++++l++Ll+f+++iA GMeYL+++nf HRDLAAR ha03751 733 DLHTYLLYSRletGPKHIPLQTLLKFMVDIALGMEYLSNRNFLHRDLAAR 782 NcLVsenlvVKIsDFGLaRdiynddyYvrkkgggklPvkWmAPEslkygk Nc++ ++++V ++DFGL++ iy+ dyY r++ +k+PvkW A Esl++++ ha03751 783 NCMLRDDMTVCVADFGLSKKIYSGDYY-RQGRIAKMPVKWIAIESLADRV 831 FtskSDVWSFGVlLWEiftlGeqPFYpgmsneevlellyedGyRLprPen +tskSDVW+FGV++WEi t+G++P Ypg+ n+e++++l +G+RL++Pe+ ha03751 832 YTSKSDVWAFGVTMWEIATRGMTP-YPGVQNHEMYDYL-LHGHRLKQPED 879 CPdelYdlMlqCWaedPedRPtFselveeL<-* C delY++M +CW+ dP dRPtFs l+ +L ha03751 880 CLDELYEIMYSCWRTDPLDRPTFSVLRLQL 909 //