hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090525/iprscan-20090525-15581262/chunk_1/iprscan-20090525-15581262.nocrc
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Query sequence: ha03751
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00219                                                 445.2   3.3e-129   1
SM00220                                                 152.8    3.6e-41   1
SM00060                                                  61.3    1.2e-13   2
SM00409                                                  58.5    8.6e-13   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00409    1/2     155   249 ..     1    58 []    28.6  0.00087
SM00409    2/2     258   336 ..     1    58 []    29.9  0.00035
SM00060    1/2     339   423 ..     1    69 []    37.1  2.4e-06
SM00060    2/2     439   525 ..     1    69 []    24.2    0.018
SM00219    1/1     642   909 ..     1   280 []   445.2 3.3e-129
SM00220    1/1     642   916 ..     1   231 []   152.8  3.6e-41

Alignments of top-scoring domains:
SM00409: domain 1 of 2, from 155 to 249: score 28.6, E = 0.00087
                   *->pp.vtvkeGesvtLtC.as........titWy...............
                       +++  +e   v+++C++s ++   ++ti+W+++++   + ++  ++
     ha03751   155    VGhIILSEHKGVKFNCsISvpniyqdtTISWWkdgkellgahhaitq 201  

                   .............LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLt
                     +++  +    ++ I++v+++D    G Y C  + ++ ++ s ++++++
     ha03751   202 fypddevtaiiasFSItSVQRSDN---GSYICKMKinNEEIVS-DPIYIE 247  

                   Vl<-*
                   V+   
     ha03751   248 VQ    249  

SM00409: domain 2 of 2, from 258 to 336: score 29.9, E = 0.00035
                   *->pp.vtvkeGesvtLtC.as......titWy................L
                      p+++ v +    +LtC+a +++ + +i+W +++++ + ++ ++++ L
     ha03751   258    PEsMNVTRNTAFNLTCqAVgppepvNIFWVqnssrvneqpekspsvL 304  

                   tI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-*
                   t++++t+      +++ C+a++++g + s +g+++ ++   
     ha03751   305 TVpGLTEM-----AVFSCEAHndKGLTVS-KGVQINIK    336  

SM00060: domain 1 of 2, from 339 to 423: score 37.1, E = 2.4e-06
                   *->PgpPsnptelrvtdvtststsdltsvtlsWepP.ivgYr........
                      P+pP+    +++++ t++      s+ +sW  P+  gY++ ++ + +
     ha03751   339    PSPPTE---VSIRNSTAH------SILISWV-PgFDGYSpfrncsiq 375  

                   .......................ytltgLkPgaepwteYefrVrAvngnd
                   +++ ++ +++++   +++  +  y ++ L++      +Y++ V++ n+  
     ha03751   376 vkeadplsngsvmifntsalphlYQIKQLQAL----ANYSIGVSCMNE-- 419  

                   aGeg<-*
                    G++   
     ha03751   420 IGWS    423  

SM00060: domain 2 of 2, from 439 to 525: score 24.2, E = 0.018
                   *->PgpPsnptelrvtdvtststsdltsvtlsWepP........ivgYr.
                        +P n   ++v    s+     + v ++W +P+ +  +++ vgYr 
     ha03751   439    SVAPLN---VTVFLNESS-----DNVDIRWMKPptkqqdgeLVGYRi 477  

                   .......................ytltgLkPgaepwteYefrVrAvngnd
                   + ++++ + +++  +++++++++++++  + +     + ++r++Av++  
     ha03751   478 shvwqsagiskelleevgqngsrARISVQVHN----ATCTVRIAAVTK-- 521  

                   aGeg<-*
                   +G g   
     ha03751   522 GGVG    525  

SM00219: domain 1 of 1, from 642 to 909: score 445.2, E = 3.3e-129
                   *->ltlgkkLGeGaFGeVykGtlk......ieVAVKtLkeda.....kee
                      l lgk+LGeG+FG V++G lk++++++++VAVKt+k d ++++++ee
     ha03751   642    LILGKILGEGEFGSVMEGNLKqedgtsLKVAVKTMKLDNssqreIEE 688  

                   FlrEakiMkklGgkHpNiVkLlGvcteegrr.FmevePlmivmEymegGd
                   Fl+Ea  Mk +  +HpN+++LlGvc+e + ++    + +m+++ +m++Gd
     ha03751   689 FLSEAACMKDF--SHPNVIRLLGVCIEMSSQgI---PKPMVILPFMKYGD 733  

                   LldyLrknrpk.....lslsdLlsfAlQIAkGMeYLesknfvHRDLAARN
                   L+ yL ++r ++++++++l++Ll+f+++IA GMeYL+ +nf HRDLAARN
     ha03751   734 LHTYLLYSRLEtgpkhIPLQTLLKFMVDIALGMEYLSNRNFLHRDLAARN 783  

                   cLvgenkvvKIsDFGLsRdlyddDkkGeskdyYrkkggkggktllPirWm
                   c++ ++ +v ++DFGLs+++y++       dyYr+     +k  +P++W 
     ha03751   784 CMLRDDMTVCVADFGLSKKIYSG-------DYYRQGR--IAK--MPVKWI 822  

                   APEslkdgkFtskSDVWSFGVlLWEiftlGeqPYpgeiqqfmsneevley
                   A+Esl d+++tskSDVW+FGV++WEi t+G++PYpg     + n e++ y
     ha03751   823 AIESLADRVYTSKSDVWAFGVTMWEIATRGMTPYPG-----VQNHEMYDY 867  

                   lkkGyRlpkPendlpiSsvtCPdelYdlMlqCWaedPedRPtFselverl
                   l +G+Rl++Pe+        C delY++M +CW+ dP dRPtFs l+ +l
     ha03751   868 LLHGHRLKQPED--------CLDELYEIMYSCWRTDPLDRPTFSVLRLQL 909  

                   <-*
                      
     ha03751     -     -    

SM00220: domain 1 of 1, from 642 to 916: score 152.8, E = 3.6e-41
                   *->YellkklGkGaFGkVylardkk...tgrlvAiKvik.........er
                        l+k+lG+G FG+V+ +  k +++t  +vA+K +k +++++++ e 
     ha03751   642    LILGKILGEGEFGSVMEGNLKQedgTSLKVAVKTMKldnssqreiEE 688  

                   ilrEikiLkk.dHPNIVkLydvfed......dklylVmEyceGdlGdLfd
                   +l+E +++k   HPN+++L++v+ + ++++  k  +++ ++    GdL++
     ha03751   689 FLSEAACMKDfSHPNVIRLLGVCIEmssqgiPKPMVILPFMKY--GDLHT 736  

                   llkkrgrrglrkvlsE.earfyfrQilsaLeYLHsqgIiHRDLKPeNiLL
                   +l   + + ++k ++ ++  +++  i++++eYL +++++HRDL   N +L
     ha03751   737 YLLYSRLETGPKHIPLqTLLKFMVDIALGMEYLSNRNFLHRDLAARNCML 786  

                   ds..hvKlaDFGlArql.........ttfvGTpeYmAPEvl...gYgkpa
                    ++ +v +aDFGl++++ +++  ++++       ++A E l ++ Y+  +
     ha03751   787 RDdmTVCVADFGLSKKIysgdyyrqgRIAKMPVKWIAIESLadrVYTS-K 835  

                   vDiWSlGcilyEllt.GkpPFp..qldlifkkig...........Speak
                   +D+W++G++++E +t+G +P+p+ q +++++ ++++++ + +++  +e+ 
     ha03751   836 SDVWAFGVTMWEIATrGMTPYPgvQNHEMYDYLLhghrlkqpedcLDELY 885  

                   dLikklLvkdPekRlta.eaLedeldikaHPff<-*
                   +++  +++ dP +R+t + +    ++ k+ + +   
     ha03751   886 EIMYSCWRTDPLDRPTFsVLRL--QLEKLLESL    916  

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