hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080811/iprscan-20080811-22075411/chunk_1/iprscan-20080811-22075411.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ha04610 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF02368.8.fs Bacterial Ig-like domain (group 2) 74.6 4.6e-21 3 PF02368.8.ls Bacterial Ig-like domain (group 2) 65.1 2e-16 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF02368.8.fs 1/3 1081 1156 .. 1 90 [] 63.3 8.5e-18 PF02368.8.ls 1/1 1081 1156 .. 1 90 [] 65.1 2e-16 Alignments of top-scoring domains: PF02368.8.fs: domain 1 of 3, from 1081 to 1156: score 63.3, E = 8.5e-18 *->avtsvtvsptgntaslakGatlqlkatvtpsdasnkdiTkkvtWsSs ++ +++++p +++l+ Gat+q++ ++ p+ +sn +s+s ha04610 1081 VFPPFRLMPR--KVTLLIGATMQVTSEGGPQPQSN------ILFSIS 1119 npsvAtVsntnSgstGlVtalakGtatItatsgdgnksasvtv<-* n+svA Vs ++GlV +la G++t++ ++ ++ + +v ha04610 1120 NESVALVS-----AAGLVQGLAIGNGTVSGLVQA-VDAETGKV 1156 PF02368.8.ls: domain 1 of 1, from 1081 to 1156: score 65.1, E = 2e-16 *->avtsvtvsptgntaslakGatlqlkatvtpsdasnkdiTkkvtWsSs ++ +++++p +++l+ Gat+q++ ++ p+ +sn +s+s ha04610 1081 VFPPFRLMPR--KVTLLIGATMQVTSEGGPQPQSN------ILFSIS 1119 npsvAtVsntnSgstGlVtalakGtatItatsgdgnksasvtv<-* n+svA Vs ++GlV +la G++t++ ++ ++ + +v ha04610 1120 NESVALVS-----AAGLVQGLAIGNGTVSGLVQA-VDAETGKV 1156 //