hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-22075411/chunk_1/iprscan-20080811-22075411.nocrc
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Query sequence: ha04610
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF02368.8.fs Bacterial Ig-like domain (group 2)              74.6    4.6e-21   3
PF02368.8.ls Bacterial Ig-like domain (group 2)              65.1      2e-16   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF02368.8.fs   1/3    1081  1156 ..     1    90 []    63.3  8.5e-18
PF02368.8.ls   1/1    1081  1156 ..     1    90 []    65.1    2e-16

Alignments of top-scoring domains:
PF02368.8.fs: domain 1 of 3, from 1081 to 1156: score 63.3, E = 8.5e-18
                   *->avtsvtvsptgntaslakGatlqlkatvtpsdasnkdiTkkvtWsSs
                      ++ +++++p   +++l+ Gat+q++ ++ p+ +sn        +s+s
     ha04610  1081    VFPPFRLMPR--KVTLLIGATMQVTSEGGPQPQSN------ILFSIS 1119 

                   npsvAtVsntnSgstGlVtalakGtatItatsgdgnksasvtv<-*
                   n+svA Vs     ++GlV +la G++t++  ++  ++  + +v   
     ha04610  1120 NESVALVS-----AAGLVQGLAIGNGTVSGLVQA-VDAETGKV    1156 

PF02368.8.ls: domain 1 of 1, from 1081 to 1156: score 65.1, E = 2e-16
                   *->avtsvtvsptgntaslakGatlqlkatvtpsdasnkdiTkkvtWsSs
                      ++ +++++p   +++l+ Gat+q++ ++ p+ +sn        +s+s
     ha04610  1081    VFPPFRLMPR--KVTLLIGATMQVTSEGGPQPQSN------ILFSIS 1119 

                   npsvAtVsntnSgstGlVtalakGtatItatsgdgnksasvtv<-*
                   n+svA Vs     ++GlV +la G++t++  ++  ++  + +v   
     ha04610  1120 NESVALVS-----AAGLVQGLAIGNGTVSGLVQA-VDAETGKV    1156 

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