hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-22075411/chunk_1/iprscan-20080811-22075411.nocrc
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Query sequence: ha04610
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00635                                                  54.7    1.2e-11   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00635    1/1    1081  1156 ..     1    86 []    54.7  1.2e-11

Alignments of top-scoring domains:
SM00635: domain 1 of 1, from 1081 to 1156: score 54.7, E = 1.2e-11
                   *->vvtsvtvtpAnttsvkkGatvqltatGvypsgatdiTkkVtWtSsnp
                      v+ ++++ p  ++++  Gat+q+t + + p+ ++    +  +++sn+
     ha04610  1081    VFPPFRLMP-RKVTLLIGATMQVTSE-GGPQPQS----NILFSISNE 1121 

                   svAtVdntggvltvtkavakGtatItvtsgdgsskavvt<-*
                   svA V+++g+   v+ ++a G+ t++  ++ +   ++++   
     ha04610  1122 SVALVSAAGL---VQ-GLAIGNGTVSGLVQAVDAETGKV    1156 

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