hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-22193242/chunk_1/iprscan-20080811-22193242.nocrc
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Query sequence: ha04660
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N 
--------       -----------                              -----    ------- ---
PF08832.1.ls   Steroid receptor coactivator             145.5    1.3e-40   1
PF08832.1.fs   Steroid receptor coactivator             143.7    4.5e-40   1
PF07469.3.fs   Domain of unknown function (DUF1518)     117.3    5.6e-33   1
PF07469.3.ls   Domain of unknown function (DUF1518)     119.3      1e-32   1
PF08815.1.ls   Nuclear receptor coactivator              90.2    5.7e-24   1
PF08815.1.fs   Nuclear receptor coactivator              88.3    1.4e-23   1
PF00989.14.fs  PAS fold                                  26.9    1.2e-07   1

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
PF00989.14.fs    1/1     118   180 ..     1    67 [.    26.9  1.2e-07
PF08832.1.fs     1/1     640   713 ..     1    96 []   143.7  4.5e-40
PF08832.1.ls     1/1     640   713 ..     1    96 []   145.5  1.3e-40
PF08815.1.fs     1/1    1075  1121 ..     1    51 []    88.3  1.4e-23
PF08815.1.ls     1/1    1075  1121 ..     1    51 []    90.2  5.7e-24
PF07469.3.ls     1/1    1285  1342 ..     1    58 []   119.3    1e-32
PF07469.3.fs     1/1    1285  1342 ..     1    58 []   117.3  5.6e-33

Alignments of top-scoring domains:
PF00989.14.fs: domain 1 of 1, from 118 to 180: score 26.9, E = 1.2e-07
                   *->edlrailesnlpdgifvvDvedGrilyvNaaaeellGlsreeviGks
                      ++   +le+ l+ + fvv+   G++++v++  ++ l +++ee+++ks
     ha04660   118    ALGPMMLEA-LDGFFFVVN-LEGNVVFVSENVTQYLRYNQEELMNKS 162  

                   lldlipeeddaeclvaelll<-*
                   ++  ++  d+ e  +++ ll   
     ha04660   163 VYSILHVGDHTE--FVKNLL    180  

PF08832.1.fs: domain 1 of 1, from 640 to 713: score 143.7, E = 4.5e-40
                   *->KshqvtshKLLQLLTtksdpleppshpslrgsdsdpscKDslgsvgg
                      K+++    KLLQLLTtksd++ep++++s ++sd++   KDs+gs++g
     ha04660   640    KGQT----KLLQLLTTKSDQMEPSPLAS-SLSDTN---KDSTGSLPG 678  

                   tsPGvsstsnpsggggnshhtSLkEKHKILHRLLQngsSPvDlAKLTAE<
                                 +g++h+tSLkEKHKILHRLLQ++sSPvDlAKLTAE 
     ha04660   679 --------------SGSTHGTSLKEKHKILHRLLQDSSSPVDLAKLTAE  713  

                   -*
                     
     ha04660     -    -    

PF08832.1.ls: domain 1 of 1, from 640 to 713: score 145.5, E = 1.3e-40
                   *->KshqvtshKLLQLLTtksdpleppshpslrgsdsdpscKDslgsvgg
                      K+++    KLLQLLTtksd++ep++++s ++sd++   KDs+gs++g
     ha04660   640    KGQT----KLLQLLTTKSDQMEPSPLAS-SLSDTN---KDSTGSLPG 678  

                   tsPGvsstsnpsggggnshhtSLkEKHKILHRLLQngsSPvDlAKLTAE<
                                 +g++h+tSLkEKHKILHRLLQ++sSPvDlAKLTAE 
     ha04660   679 --------------SGSTHGTSLKEKHKILHRLLQDSSSPVDLAKLTAE  713  

                   -*
                     
     ha04660     -    -    

PF08815.1.fs: domain 1 of 1, from 1075 to 1121: score 88.3, E = 1.4e-23
                   *->egqsDEkALLdQLvslLkdtdesgLeEiDraLGIpeLVgQsqaldsk
                      e++sDE+ALLdQL+ +L+++d  gLeEiDraLGIpeLV+Qsqa+d  
     ha04660  1075    ESPSDEGALLDQLYLALRNFD--GLEEIDRALGIPELVSQSQAVDP- 1118 

                   sdqf<-*
                    +qf   
     ha04660  1119 -EQF    1121 

PF08815.1.ls: domain 1 of 1, from 1075 to 1121: score 90.2, E = 5.7e-24
                   *->egqsDEkALLdQLvslLkdtdesgLeEiDraLGIpeLVgQsqaldsk
                      e++sDE+ALLdQL+ +L+++d  gLeEiDraLGIpeLV+Qsqa+d  
     ha04660  1075    ESPSDEGALLDQLYLALRNFD--GLEEIDRALGIPELVSQSQAVDP- 1118 

                   sdqf<-*
                    +qf   
     ha04660  1119 -EQF    1121 

PF07469.3.ls: domain 1 of 1, from 1285 to 1342: score 119.3, E = 1e-32
                   *->gmpgqlgnPrmPQanpqQFpYPPNyGmgqqsdPaFtspfSPqSplmS
                      gmp+ ++nPr+PQan+qQFp+PPNyG++qq+dP+Ft++++PqSplmS
     ha04660  1285    GMPATMSNPRIPQANAQQFPFPPNYGISQQPDPGFTGATTPQSPLMS 1331 

                   prmgpsqSsml<-*
                   prm+++qS+m+   
     ha04660  1332 PRMAHTQSPMM    1342 

PF07469.3.fs: domain 1 of 1, from 1285 to 1342: score 117.3, E = 5.6e-33
                   *->gmpgqlgnPrmPQanpqQFpYPPNyGmgqqsdPaFtspfSPqSplmS
                      gmp+ ++nPr+PQan+qQFp+PPNyG++qq+dP+Ft++++PqSplmS
     ha04660  1285    GMPATMSNPRIPQANAQQFPFPPNYGISQQPDPGFTGATTPQSPLMS 1331 

                   prmgpsqSsml<-*
                   prm+++qS+m+   
     ha04660  1332 PRMAHTQSPMM    1342 

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