hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-22193242/chunk_1/iprscan-20080811-22193242.nocrc
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Query sequence: ha04660
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00091                                                  49.7    3.8e-10   1
SM00353                                                  42.3    6.3e-08   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00353    1/1      36    93 ..     1    61 []    42.3  6.3e-08
SM00091    1/1     118   185 ..     1    68 []    49.7  3.8e-10

Alignments of top-scoring domains:
SM00353: domain 1 of 1, from 36 to 93: score 42.3, E = 6.3e-08
                   *->narERrlrRRekiNeqafdeLrslvPtlpk.gggnskKlsKasiLrl
                         E+  r Re+ N+ +++eL++l+  +++++++ + K++K +iL++
     ha04660    36    RNTEK--RNREQENK-YIEELAELIFANFNdIDNFNFKPDKCAILKE 79   

                   AieYIrksLqeqlqe<-*
                   +++ I ++ +eq++    
     ha04660    80 TVKQI-RQIKEQEKA    93   

SM00091: domain 1 of 1, from 118 to 185: score 49.7, E = 3.8e-10
                   *->erlraileslpdgiivldldGrilyaNpaaeellGyspeeliGksll
                      +   ++le+l+ +++v++l+G++++++++++++l y +eel+ ks++
     ha04660   118    ALGPMMLEALDGFFFVVNLEGNVVFVSENVTQYLRYNQEELMNKSVY 164  

                   elihpedrlleevqe.lqrlla<-*
                    ++h +d++ e+v+  l +++    
     ha04660   165 SILHVGDHT-EFVKNlLPKSIV    185  

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