hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080811/iprscan-20080811-22305390/chunk_1/iprscan-20080811-22305390.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ha04696 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF08604.1.fs Nucleoporin Nup153-like 1151.3 0 2 PF08604.1.ls Nucleoporin Nup153-like 1115.8 0 1 PF00641.9.ls Zn-finger in Ran binding protein and others 209.6 6.8e-60 4 PF00641.9.fs Zn-finger in Ran binding protein and others 201.7 1.5e-57 4 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF08604.1.ls 1/1 135 614 .. 1 555 [] 1115.8 0 PF08604.1.fs 1/2 135 595 .. 1 493 [. 1131.5 0 PF08604.1.fs 2/2 596 614 .. 536 555 .] 19.8 7.9e-06 PF00641.9.ls 1/4 637 667 .. 1 32 [] 53.0 9.4e-13 PF00641.9.fs 1/4 637 667 .. 1 32 [] 51.0 9.1e-13 PF00641.9.ls 2/4 702 731 .. 1 32 [] 55.6 1.5e-13 PF00641.9.fs 2/4 702 731 .. 1 32 [] 53.7 1.7e-13 PF00641.9.ls 3/4 773 802 .. 1 32 [] 47.5 4.2e-11 PF00641.9.fs 3/4 773 802 .. 1 32 [] 45.5 2.7e-11 PF00641.9.ls 4/4 831 860 .. 1 32 [] 53.5 6.6e-13 PF00641.9.fs 4/4 831 860 .. 1 32 [] 51.5 6.5e-13 Alignments of top-scoring domains: PF08604.1.ls: domain 1 of 1, from 135 to 614: score 1115.8, E = 0 *->PstskqalNytdFvLtRPsLhRsHDELnFksLdslhPnLGnSpALsc Pst+++a+Ny+d vLtRPsLhRsH LnF++L+ SpAL+c ha04696 135 PSTTSTASNYPD-VLTRPSLHRSH--LNFSMLE--------SPALHC 170 qPStSSAfpIgTPKSGFSLvKeIKDstSqHDDDNIsTTSGfSSrasDKDv qPStSSAfpIg+ SGFSLvKeIKDstSqHDDDNIsTTSGfSSrasDKD+ ha04696 171 QPSTSSAFPIGS--SGFSLVKEIKDSTSQHDDDNISTTSGFSSRASDKDI 218 avskteSlPpLWsPevdRShSlsqsskkSskKPaFNLSaFGtlspssGNd +vsk++SlPpLWsPe++RShSlsq++++SskKPaFNLSaFGtlsps+GN+ ha04696 219 TVSKNTSLPPLWSPEAERSHSLSQHTATSSKKPAFNLSAFGTLSPSLGNS 268 SiLslsqLGDsPFYPGktTYgGaAAAvRSSRrRPaTPYQAPvRRqiKakP SiL++sqLGDsPFYPGktTYgGaAAAvR+S++R +TPYQAPvRRq+Kak+ ha04696 269 SILKTSQLGDSPFYPGKTTYGGAAAAVRQSKLR-NTPYQAPVRRQMKAKQ 317 aaAQscGVTSstARRILqSLEkMSSPLADAkRiPslvnSpLQTDSnpldt ++AQs+GVTSstARRILqSLEkMSSPLADAkRiPs+v+SpL ++pld+ ha04696 318 LSAQSYGVTSSTARRILQSLEKMSSPLADAKRIPSIVSSPL---NSPLDR 364 mfiDilesqAKrkKvDityPPVqRLvTPksvsvstnRslyiKPsLTPSaV ++iDi+++qAKr+KvD++yPPVqRL+TPk+vs++tnRs+y+KPsLTPS++ ha04696 365 SGIDITDFQAKREKVDSQYPPVQRLMTPKPVSIATNRSVYFKPSLTPSGE 414 srdlderiaedkceddvkynalpKQnpkqerSafsYPifStPaaNglssG +r++++ri+ +kc++++++n++p+Qn++q++S+fsYP+fS+PaaNglssG ha04696 415 FRKTNQRID-NKCSTGYEKNMTPGQNREQRESGFSYPNFSLPAANGLSSG 463 vGGGGGKmkRerpsfRvssKpleEEElPeaPvLPkIsLPiktspaLPtFt vGGGGGKm+Rer f v+sKpleEEE+ e+PvLPkIsLPi ts++LPtF+ ha04696 464 VGGGGGKMRRERTRF-VASKPLEEEEM-EVPVLPKISLPI-TSSSLPTFN 510 FsspeltktfshsPiskdtpAksqevkltsslStpspqFtFSSPIvkSTT Fsspe+t++ s+sPi+ +++A++++v++ts++St+sp+F+FSSPIvkST ha04696 511 FSSPEITTS-SPSPIN-SSQALTNKVQMTSPSSTGSPMFKFSSPIVKST- 557 ResnVepPSpSkeftSSHFSVPvaKiEPKteatgdkslvvpvfevkptht e+nV+pPS S++ft FSVPvaK+ +e++g++s+++p+++++ ha04696 558 -EANVLPPS-SIGFT---FSVPVAKT---AELSGSSSTLEPIISSS---- 595 AtvqstnlkdnePkptfGafkPAKTLkeGSVLDlLksPGFfSsPspkrea GF +sP+++++a ha04696 596 --------------------------------------GF-ASPKIDSVA 606 tqktansP<-* +q+ta+sP ha04696 607 AQPTATSP 614 PF08604.1.fs: domain 1 of 2, from 135 to 595: score 1131.5, E = 0 *->PstskqalNytdFvLtRPsLhRsHDELnFksLdslhPnLGnSpALsc Pst+++a+Ny+d vLtRPsLhRsH LnF++L+ SpAL+c ha04696 135 PSTTSTASNYPD-VLTRPSLHRSH--LNFSMLE--------SPALHC 170 qPStSSAfpIgTPKSGFSLvKeIKDstSqHDDDNIsTTSGfSSrasDKDv qPStSSAfpIg+ SGFSLvKeIKDstSqHDDDNIsTTSGfSSrasDKD+ ha04696 171 QPSTSSAFPIGS--SGFSLVKEIKDSTSQHDDDNISTTSGFSSRASDKDI 218 avskteSlPpLWsPevdRShSlsqsskkSskKPaFNLSaFGtlspssGNd +vsk++SlPpLWsPe++RShSlsq++++SskKPaFNLSaFGtlsps+GN+ ha04696 219 TVSKNTSLPPLWSPEAERSHSLSQHTATSSKKPAFNLSAFGTLSPSLGNS 268 SiLslsqLGDsPFYPGktTYgGaAAAvRSSRrRPaTPYQAPvRRqiKakP SiL++sqLGDsPFYPGktTYgGaAAAvR+S++R +TPYQAPvRRq+Kak+ ha04696 269 SILKTSQLGDSPFYPGKTTYGGAAAAVRQSKLR-NTPYQAPVRRQMKAKQ 317 aaAQscGVTSstARRILqSLEkMSSPLADAkRiPslvnSpLQTDSnpldt ++AQs+GVTSstARRILqSLEkMSSPLADAkRiPs+v+SpL ++pld+ ha04696 318 LSAQSYGVTSSTARRILQSLEKMSSPLADAKRIPSIVSSPL---NSPLDR 364 mfiDilesqAKrkKvDityPPVqRLvTPksvsvstnRslyiKPsLTPSaV ++iDi+++qAKr+KvD++yPPVqRL+TPk+vs++tnRs+y+KPsLTPS++ ha04696 365 SGIDITDFQAKREKVDSQYPPVQRLMTPKPVSIATNRSVYFKPSLTPSGE 414 srdlderiaedkceddvkynalpKQnpkqerSafsYPifStPaaNglssG +r++++ri+ +kc++++++n++p+Qn++q++S+fsYP+fS+PaaNglssG ha04696 415 FRKTNQRID-NKCSTGYEKNMTPGQNREQRESGFSYPNFSLPAANGLSSG 463 vGGGGGKmkRerpsfRvssKpleEEElPeaPvLPkIsLPiktspaLPtFt vGGGGGKm+Rer f v+sKpleEEE+ e+PvLPkIsLPi ts++LPtF+ ha04696 464 VGGGGGKMRRERTRF-VASKPLEEEEM-EVPVLPKISLPI-TSSSLPTFN 510 FsspeltktfshsPiskdtpAksqevkltsslStpspqFtFSSPIvkSTT Fsspe+t++ s+sPi+ +++A++++v++ts++St+sp+F+FSSPIvkST ha04696 511 FSSPEITTS-SPSPIN-SSQALTNKVQMTSPSSTGSPMFKFSSPIVKST- 557 ResnVepPSpSkeftSSHFSVPvaKiEPKteatgdkslvvpvfevk<-* e+nV+pPS S++ft FSVPvaK+ +e++g++s+++p+++++ ha04696 558 -EANVLPPS-SIGFT---FSVPVAKT---AELSGSSSTLEPIISSS 595 PF08604.1.fs: domain 2 of 2, from 596 to 614: score 19.8, E = 7.9e-06 *->GFfSsPspkreatqktansP<-* GF +sP+++++a+q+ta+sP ha04696 596 GF-ASPKIDSVAAQPTATSP 614 PF00641.9.ls: domain 1 of 4, from 637 to 667: score 53.0, E = 9.4e-13 *->ragsdWdCissClvqNfatstkCvaCqapkps<-* +ags+W+C ++Cl+qN+ t++kC+aCqa+k s ha04696 637 KAGSSWQC-DTCLLQNKVTDNKCIACQAAKLS 667 PF00641.9.fs: domain 1 of 4, from 637 to 667: score 51.0, E = 9.1e-13 *->ragsdWdCissClvqNfatstkCvaCqapkps<-* +ags+W+C ++Cl+qN+ t++kC+aCqa+k s ha04696 637 KAGSSWQC-DTCLLQNKVTDNKCIACQAAKLS 667 PF00641.9.ls: domain 2 of 4, from 702 to 731: score 55.6, E = 1.5e-13 *->ragsdWdCissClvqNfatstkCvaCqapkps<-* +g WdC ++ClvqN++++ kCvaC++pkp+ ha04696 702 VIG-TWDC-DTCLVQNKPEAIKCVACETPKPG 731 PF00641.9.fs: domain 2 of 4, from 702 to 731: score 53.7, E = 1.7e-13 *->ragsdWdCissClvqNfatstkCvaCqapkps<-* +g WdC ++ClvqN++++ kCvaC++pkp+ ha04696 702 VIG-TWDC-DTCLVQNKPEAIKCVACETPKPG 731 PF00641.9.ls: domain 3 of 4, from 773 to 802: score 47.5, E = 4.2e-11 *->ragsdWdCissClvqNfatstkCvaCqapkps<-* ++g +W+C s+C+v+N a+++kCv+C+++kp+ ha04696 773 PIG-SWEC-SVCCVSNNAEDNKCVSCMSEKPG 802 PF00641.9.fs: domain 3 of 4, from 773 to 802: score 45.5, E = 2.7e-11 *->ragsdWdCissClvqNfatstkCvaCqapkps<-* ++g +W+C s+C+v+N a+++kCv+C+++kp+ ha04696 773 PIG-SWEC-SVCCVSNNAEDNKCVSCMSEKPG 802 PF00641.9.ls: domain 4 of 4, from 831 to 860: score 53.5, E = 6.6e-13 *->ragsdWdCissClvqNfatstkCvaCqapkps<-* ++g +WdC ClvqN+a stkC+aC+++kp+ ha04696 831 PEG-SWDC-ELCLVQNKADSTKCLACESAKPG 860 PF00641.9.fs: domain 4 of 4, from 831 to 860: score 51.5, E = 6.5e-13 *->ragsdWdCissClvqNfatstkCvaCqapkps<-* ++g +WdC ClvqN+a stkC+aC+++kp+ ha04696 831 PEG-SWDC-ELCLVQNKADSTKCLACESAKPG 860 //