hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-22305390/chunk_1/iprscan-20080811-22305390.nocrc
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Query sequence: ha04696
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00547                                                 137.3    1.6e-36   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00547    1/4     640   664 ..     1    25 []    35.4  7.6e-06
SM00547    2/4     704   728 ..     1    25 []    43.7  2.4e-08
SM00547    3/4     775   799 ..     1    25 []    22.3    0.048
SM00547    4/4     833   857 ..     1    25 []    35.8  5.7e-06

Alignments of top-scoring domains:
SM00547: domain 1 of 4, from 640 to 664: score 35.4, E = 7.6e-06
                   *->gdWeCpaCtflNfasrskCfaCgap<-*
                      ++W+C++C+++N+ +++kC+aC+a    
     ha04696   640    SSWQCDTCLLQNKVTDNKCIACQAA    664  

SM00547: domain 2 of 4, from 704 to 728: score 43.7, E = 2.4e-08
                   *->gdWeCpaCtflNfasrskCfaCgap<-*
                      g W C++C+++N+++++kC+aC++p   
     ha04696   704    GTWDCDTCLVQNKPEAIKCVACETP    728  

SM00547: domain 3 of 4, from 775 to 799: score 22.3, E = 0.048
                   *->gdWeCpaCtflNfasrskCfaCgap<-*
                      g+WeC++C+++N a+++kC+ C      
     ha04696   775    GSWECSVCCVSNNAEDNKCVSCMSE    799  

SM00547: domain 4 of 4, from 833 to 857: score 35.8, E = 5.7e-06
                   *->gdWeCpaCtflNfasrskCfaCgap<-*
                      g+W C+ C+++N+a ++kC aC+     
     ha04696   833    GSWDCELCLVQNKADSTKCLACESA    857  

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