hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-22484396/chunk_1/iprscan-20080811-22484396.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: ha04794
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF08146.2.ls BP28CT (NUC211) domain                         278.1    1.6e-80   1
PF08146.2.fs BP28CT (NUC211) domain                         276.2    6.1e-80   1
PF02985.12.ls HEAT repeat                                     64.7    2.8e-16   6
PF02985.12.fs HEAT repeat                                     57.7    3.5e-15   8

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF02985.12.ls   1/6     237   273 ..     1    36 []    12.1      1.3
PF02985.12.ls   3/6     914   950 ..     1    36 []    21.7   0.0024
PF08146.2.ls   1/1    1858  2011 ..     1   170 []   278.1  1.6e-80
PF08146.2.fs   1/1    1858  2011 ..     1   170 []   276.2  6.1e-80
PF02985.12.ls   5/6    2060  2096 ..     1    36 []    12.7      1.1

Alignments of top-scoring domains:
PF02985.12.ls: domain 1 of 6, from 237 to 273: score 12.1, E = 1.3
                   *->e.ildellplllkllnDpdpeVReaAaeaLgalaevl<-*
                      ++i+ +l+p+++k+l+++ p+ R+a+   +++++ ++   
     ha04794   237    DnIIAKLFPYIQKGLKSSLPDYRAATYMIICQISVKV    273  

PF02985.12.ls: domain 3 of 6, from 914 to 950: score 21.7, E = 0.0024
                   *->e.ildellplllkllnDpdpeVReaAaeaLgalaevl<-*
                      ++i + ++  ll  l++p+ eVR+aA+++L al+ v+   
     ha04794   914    AsISSPVVTSLLINLGSPVKEVRRAAIQCLQALSGVA    950  

PF08146.2.ls: domain 1 of 1, from 1858 to 2011: score 278.1, E = 1.6e-80
                   *->KssitsqstllfklfLeAldfRsqlraadtfdnntidriEasviecf
                      K+++ts++++l+ +fLeAldfR+q++++d+   +++ ++E+++i+c+
     ha04794  1858    KEELTSHQSQLTAFFLEALDFRAQHSENDL---EEVGKTENCIIDCL 1901 

                   vayvlKLsdktFRPLFvklvdWAlegesskdlsgtkieRlltFykfanrl
                   va+v+KLs++tFRPLF+kl+dWA++++++k       +RlltFy++a+++
     ha04794  1902 VAMVVKLSEVTFRPLFFKLFDWAKTEDAPK-------DRLLTFYNLADCI 1944 

                   aEnLKSIftsYfsylldpavelLnrfnasdtdrafkdseiqqesdsiqek
                   aE+LK++ft+++++l++p+ ++Ln++n+s+td+af+dse+++e      k
     ha04794  1945 AEKLKGLFTLFAGHLVKPFADTLNQVNISKTDEAFFDSENDPE------K 1988 

                   nvnLrrlvLssLtssFlyDtdeF<-*
                   ++ L++++L++L+++Fl+Dt++F   
     ha04794  1989 CCLLLQFILNCLYKIFLFDTQHF    2011 

PF08146.2.fs: domain 1 of 1, from 1858 to 2011: score 276.2, E = 6.1e-80
                   *->KssitsqstllfklfLeAldfRsqlraadtfdnntidriEasviecf
                      K+++ts++++l+ +fLeAldfR+q++++d+   +++ ++E+++i+c+
     ha04794  1858    KEELTSHQSQLTAFFLEALDFRAQHSENDL---EEVGKTENCIIDCL 1901 

                   vayvlKLsdktFRPLFvklvdWAlegesskdlsgtkieRlltFykfanrl
                   va+v+KLs++tFRPLF+kl+dWA++++++k       +RlltFy++a+++
     ha04794  1902 VAMVVKLSEVTFRPLFFKLFDWAKTEDAPK-------DRLLTFYNLADCI 1944 

                   aEnLKSIftsYfsylldpavelLnrfnasdtdrafkdseiqqesdsiqek
                   aE+LK++ft+++++l++p+ ++Ln++n+s+td+af+dse+++e      k
     ha04794  1945 AEKLKGLFTLFAGHLVKPFADTLNQVNISKTDEAFFDSENDPE------K 1988 

                   nvnLrrlvLssLtssFlyDtdeF<-*
                   ++ L++++L++L+++Fl+Dt++F   
     ha04794  1989 CCLLLQFILNCLYKIFLFDTQHF    2011 

PF02985.12.ls: domain 5 of 6, from 2060 to 2096: score 12.7, E = 1.1
                   *->e.ildellplllkllnDpdpeVReaAaeaLgalaevl<-*
                      +++ + l   +l   +D++p+VR aA+ ++ alae+l   
     ha04794  2060    DsLWKPLNYQILLKTRDSSPKVRFAALITVLALAEKL    2096 

//