hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080811/iprscan-20080811-23002646/chunk_1/iprscan-20080811-23002646.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ha04833 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00856.18.ls SET domain 182.0 1.3e-51 1 PF00856.18.fs SET domain 180.6 3.7e-51 1 PF00855.8.fs PWWP domain 139.9 4.5e-41 2 PF00855.8.ls PWWP domain 144.9 2e-40 2 PF00628.19.fs PHD-finger 104.0 5.7e-33 4 PF00628.19.ls PHD-finger 104.6 2.8e-28 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00855.8.fs 1/2 273 352 .. 1 86 [] 65.1 8.2e-19 PF00855.8.ls 1/2 273 352 .. 1 86 [] 67.0 5.6e-17 PF00628.19.fs 1/4 709 754 .. 1 51 [] 33.6 2.3e-10 PF00628.19.ls 1/3 709 754 .. 1 51 [] 35.4 1.8e-07 PF00628.19.ls 2/3 921 961 .. 1 51 [] 35.8 1.4e-07 PF00628.19.fs 3/4 923 961 .. 5 51 .] 36.3 3e-11 PF00855.8.fs 2/2 963 1032 .. 1 79 [. 74.8 1e-21 PF00855.8.ls 2/2 963 1039 .. 1 86 [] 77.9 3e-20 PF00856.18.ls 1/1 1145 1274 .. 1 259 [] 182.0 1.3e-51 PF00856.18.fs 1/1 1145 1274 .. 1 259 [] 180.6 3.7e-51 PF00628.19.fs 4/4 1329 1379 .. 1 51 [] 31.5 1.1e-09 PF00628.19.ls 3/3 1329 1379 .. 1 51 [] 33.4 7.3e-07 Alignments of top-scoring domains: PF00855.8.fs: domain 1 of 2, from 273 to 352: score 65.1, E = 8.2e-19 *->dfkpGDLVwAKmkGFpwWPArvvsqketptsvrkkLKRntnsrksnr +f+ GDLVw K++ +pwWP++v s + + +v k n r + ha04833 273 KFQVGDLVWSKVGTYPWWPCMVSSDPQL--EVHTK----INTRGARE 313 vkVqFFgdhkyrawvskkrlkPlLdsdiekfhkdekrKg<-* ++VqFF+ + rawv+ kr+ ++ + + ++e+ K+ ha04833 314 YHVQFFSNQPERAWVHEKRVREYKGHKQYEELLAEATKQ 352 PF00855.8.ls: domain 1 of 2, from 273 to 352: score 67.0, E = 5.6e-17 *->dfkpGDLVwAKmkGFpwWPArvvsqketptsvrkkLKRntnsrksnr +f+ GDLVw K++ +pwWP++v s + + +v k n r + ha04833 273 KFQVGDLVWSKVGTYPWWPCMVSSDPQL--EVHTK----INTRGARE 313 vkVqFFgdhkyrawvskkrlkPlLdsdiekfhkdekrKg<-* ++VqFF+ + rawv+ kr+ ++ + + ++e+ K+ ha04833 314 YHVQFFSNQPERAWVHEKRVREYKGHKQYEELLAEATKQ 352 PF00628.19.fs: domain 1 of 4, from 709 to 754: score 33.6, E = 2.3e-10 *->yCsvCgkeysdaggdllqCDg.CdrwfHlaClgpplepeeipe..Wy C++C + s g+ l+ C+g+C+++fHl+Clg+ +p+++++ ha04833 709 VCQICES--S--GDSLIPCEGeCCKHFHLECLGLA----SLPDskFI 747 CpeCkpk<-* C eCk + ha04833 748 CMECKTG 754 PF00628.19.ls: domain 1 of 3, from 709 to 754: score 35.4, E = 1.8e-07 *->yCsvCgkeysdaggdllqCDg.CdrwfHlaClgpplepeeipe..Wy C++C + s g+ l+ C+g+C+++fHl+Clg+ +p+++++ ha04833 709 VCQICES--S--GDSLIPCEGeCCKHFHLECLGLA----SLPDskFI 747 CpeCkpk<-* C eCk + ha04833 748 CMECKTG 754 PF00628.19.ls: domain 2 of 3, from 921 to 961: score 35.8, E = 1.4e-07 *->yCsvCgkeysdaggdllqCDgCdrwfHlaClgpplepeeipe..WyC + C k gg+ll+C++C+ +fH++Cl++ e+pe+ W C ha04833 921 --KKCEK-----GGRLLCCESCPASFHPECLSI-----EMPEgcWNC 955 peCkpk<-* ++Ck++ ha04833 956 NDCKAG 961 PF00628.19.fs: domain 3 of 4, from 923 to 961: score 36.3, E = 3e-11 *->CgkeysdaggdllqCDgCdrwfHlaClgpplepeeipe..WyCpeCk C k gg+ll+C++C+ +fH++Cl++ e+pe+ W C++Ck ha04833 923 CEK-----GGRLLCCESCPASFHPECLSI-----EMPEgcWNCNDCK 959 pk<-* ++ ha04833 960 AG 961 PF00855.8.fs: domain 2 of 2, from 963 to 1032: score 74.8, E = 1e-21 *->dfkpGDLVwAKmkGFpwWPArvvsqketptsvrkkLKRntnsrksnr ++++ +Vw+K++ ++wWPA++++++++p ++ ++ + ha04833 963 KLHYKQIVWVKLGNYRWWPAEICNPRSVPLNIQ------GLKHDLGD 1003 vkVqFFgdhkyrawvskkrlkPlLdsdiekfh<-* ++V+FFg+h+y +wv++ r++P+ ++++k++ ha04833 1004 FPVFFFGSHDY-YWVHQGRVFPY--VEGDKSF 1032 PF00855.8.ls: domain 2 of 2, from 963 to 1039: score 77.9, E = 3e-20 *->dfkpGDLVwAKmkGFpwWPArvvsqketptsvrkkLKRntnsrksnr ++++ +Vw+K++ ++wWPA++++++++p ++ ++ + ha04833 963 KLHYKQIVWVKLGNYRWWPAEICNPRSVPLNIQ------GLKHDLGD 1003 vkVqFFgdhkyrawvskkrlkPlLdsdiekfhkdekrKg<-* ++V+FFg+h+y +wv++ r++P+ ++++k++ + ha04833 1004 FPVFFFGSHDY-YWVHQGRVFPY--VEGDKSFAEGQTSI 1039 PF00856.18.ls: domain 1 of 1, from 1145 to 1274: score 182.0, E = 1.3e-51 *->vqkgkwlrlegfkteikGwGlratedIpkGefiiEYpGelitseeae ++k+ +++ e++kte +GwGlr++++I+kGef+ EY+Geli+ ee++ ha04833 1145 FTKRLYPDAEIIKTERRGWGLRTKRSIKKGEFVNEYVGELIDEEECR 1191 kreddllglklydndgdksldeYlfdldalfLlyEklkSfWkpYiiLPdy r k+ + + +++ Y++ + ha04833 1192 LRI------KRAHENSVTNF--YMLTVTK--------------------- 1212 sPlfWseeellLkGtqlletdkleleeydllaeeievvlqhklFpdveee ha04833 - -------------------------------------------------- - fsfedflWaasivsSRafslvegvnresensegslelviDAtrkGNiaRF + +iDA+ kGN++RF ha04833 1213 -----------------------------------DRIIDAGPKGNYSRF 1227 iNHSCePNcevqvvfvdgedpgsdedaglepgdprivlfAlrdIpaGeEL +NHSC+PNce+q+++v+ gd r++lfAl+dIpaG EL ha04833 1228 MNHSCNPNCETQKWTVN--------------GDVRVGLFALCDIPAGMEL 1263 tydYgydksnge<-* t++Y+ ++ g+ ha04833 1264 TFNYN-LDCLGN 1274 PF00856.18.fs: domain 1 of 1, from 1145 to 1274: score 180.6, E = 3.7e-51 *->vqkgkwlrlegfkteikGwGlratedIpkGefiiEYpGelitseeae ++k+ +++ e++kte +GwGlr++++I+kGef+ EY+Geli+ ee++ ha04833 1145 FTKRLYPDAEIIKTERRGWGLRTKRSIKKGEFVNEYVGELIDEEECR 1191 kreddllglklydndgdksldeYlfdldalfLlyEklkSfWkpYiiLPdy r k+ + + +++ Y++ + ha04833 1192 LRI------KRAHENSVTNF--YMLTVTK--------------------- 1212 sPlfWseeellLkGtqlletdkleleeydllaeeievvlqhklFpdveee ha04833 - -------------------------------------------------- - fsfedflWaasivsSRafslvegvnresensegslelviDAtrkGNiaRF + +iDA+ kGN++RF ha04833 1213 -----------------------------------DRIIDAGPKGNYSRF 1227 iNHSCePNcevqvvfvdgedpgsdedaglepgdprivlfAlrdIpaGeEL +NHSC+PNce+q+++v+ gd r++lfAl+dIpaG EL ha04833 1228 MNHSCNPNCETQKWTVN--------------GDVRVGLFALCDIPAGMEL 1263 tydYgydksnge<-* t++Y+ ++ g+ ha04833 1264 TFNYN-LDCLGN 1274 PF00628.19.fs: domain 4 of 4, from 1329 to 1379: score 31.5, E = 1.1e-09 *->yCsvCgkeysdaggdllqCD..gCdrwfHlaClgpplepeeipe... yC Cg+ gg+l+ CD+++C++++Hl Cl+++ +p+++ e + ha04833 1329 YCFQCGD-----GGELVMCDkkDCPKAYHLLCLNLTQPPYGKWEcpw 1370 WyCpeCkpk<-* +C+eC ++ ha04833 1371 HQCDECSSA 1379 PF00628.19.ls: domain 3 of 3, from 1329 to 1379: score 33.4, E = 7.3e-07 *->yCsvCgkeysdaggdllqCD..gCdrwfHlaClgpplepeeipe... yC Cg+ gg+l+ CD+++C++++Hl Cl+++ +p+++ e + ha04833 1329 YCFQCGD-----GGELVMCDkkDCPKAYHLLCLNLTQPPYGKWEcpw 1370 WyCpeCkpk<-* +C+eC ++ ha04833 1371 HQCDECSSA 1379 //